Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq222699 232 8e-55 seq205188 230 3e-54 seq46353 96.9 4e-14 seq170211 87.8 2e-11 seq36327 87.8 2e-11 seq65218 86.0 8e-11 >seq222699 Length=2956 Score = 232 bits (256), Expect = 8e-55 Identities = 227/293 (77%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||||||||||||||| || || | |||| || ||||| Sbjct 369 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCACGGGCCTCGGCGGCTTGG 310 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 | ||||||||||| ||| |||| ||||| ||| |||||||||||| |||||| || Sbjct 309 ATTTCCTTCATGAAGCGGGCGGCGAGGTTTTCGAGAACGATGCCGTCGGAGGCGGCAAAG 250 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| |||| ||||||| ||||| |||| || |||||||| | Sbjct 249 AAGGCGAGGACGTGGGTGATGAAGTAGCGCTCGCCGTCGGTGAGGGAGTCCCAGTGGCGG 190 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| | || || ||||| ||||||||||||| ||||| ||||| || |||||| Sbjct 189 AGGTCTTGGGAAAGATCAACCTCTTCGGCGGTCCAGAAAGAGGCTTCGGCTTTCTTGTAC 130 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 || ||||| | ||| |||| |||| ||||| | | || |||| |||||| Sbjct 129 ATTTCCCAAATTTGGGGGTATTGGATTGGGAACATGCAGAACCGGTCGGGGTT 77 Score = 158 bits (174), Expect = 1e-32 Identities = 186/252 (74%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 869200 TTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCA 869259 ||||||| |||| |||||||||||| | |||||||||||| |||||||| || | ||| Sbjct 628 TTCGTTGGAGAAGGTGAGGCCGGGCATCAAGCCGCGCTTCTTTAGCCAAAATATCGAGCA 569 Query 869260 GAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAA 869319 ||| ||||| ||||| ||||| ||||||||| ||| ||| ||| ||| ||||||||||| Sbjct 568 GAAGCTGCCGGAGAAGAAGATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCAAA 509 Query 869320 GGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGA 869379 || |||| | | || |||||| || ||||| | |||||| || || | Sbjct 508 GGAGTCGGTGGCATC------GATCCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACA 455 Query 869380 CGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGT 869439 || | || || | |||||| || ||||| | |||||||| | ||| |||| ||||| Sbjct 454 GGGGATGGTATCTACGGCGCGGAACAGGTGATTCTTTTCGGTGGAGTCTTTGATGTAGGT 395 Query 869440 GTCGATCAGGAG 869451 || | ||||| Sbjct 394 TTCCAAGAGGAG 383 Score = 87.8 bits (96), Expect = 2e-11 Identities = 207/310 (67%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 || || || |||||| || || ||||| || ||||||| ||| || || | ||||||| Sbjct 954 TAGTCCCCAACGCGCTTTTCAAAGAAGTTAGTTTTGCCCTGGAGAGATATAAGCTCCATC 895 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 || || || || | ||| ||| ||||||| |||| | |||| ||| Sbjct 894 CAGTCAAAGGGATTCTGAACACCGTACACCTTCCCGCATCCAAGCGCACCCAGCAACCGG 835 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 || || |||||||| || || || | ||| || | ||||||| || | | ||| Sbjct 834 TCCGCAACAAACTCAATATATTGACTCATTAGCTCCCCGTTCATCCCCACCAACGCACAG 775 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTG 868939 || |||| |||| |||||||||| |||| || || || || ||| | |||| ||| Sbjct 774 GGAAGCGCGTCGCACACAAACTCTCTCTCTATGTCAACCGCTTCGCGCACAATCT-CCTT 716 Query 868940 GGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCA 868998 | || ||| | | | |||| | ||| | | ||| | ||||| || |||||||| Sbjct 715 CACGCGCTCGTCGGTGAGCTTCCTCCTGAGGAGAGAGTACAAGAGGCACGCGAAGTCGCA 656 Query 868999 GTGCAACCCT 869008 ||| | |||| Sbjct 655 GTGAAGCCCT 646 >seq205188 Length=846 Score = 230 bits (254), Expect = 3e-54 Identities = 214/272 (79%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| ||||||||||||||||||||||||||||||||||| | |||| | || ||| Sbjct 286 GAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCGCGGGCCTCGGAGACCTGG 345 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||||||||| || |||||||| ||||| ||| |||||||||||| ||||||||| Sbjct 346 ACCTCCTTCATAAAACGGCCGGCGAGGTTTTCGAGTACGATGCCGTCGGAGGCGGCGAAG 405 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| || ||||||||| ||||| |||| | ||| ||| | Sbjct 406 AAGGCAAGGACGTGGGTGATGAAATGGCGCTCGCCGTCGGTGAGAGTGTTCCAATGGCTG 465 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 |||| ||| || |||||||| || ||||||| |||||| || || || |||||| Sbjct 466 ATGTCCTGAGAGAGATCGACCTCCTCCGCCGTCCAGAACGAGGCTTCTGCTTTCTTGTAC 525 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 || ||||| | ||| |||| |||||||||| Sbjct 526 ATTTCCCAGATTTGGGGGTATTGGATAGGGAA 557 Score = 136 bits (150), Expect = 5e-26 Identities = 195/274 (71%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| |||||||| ||| | ||||||| |||| ||| || ||||||||||| || || Sbjct 6 ACCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCTGGCATGAGGCCCCGTTT 65 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||||| ||| || || || ||||| ||||| ||||| ||| |||||| Sbjct 66 CTTGAGCCAGAAGATGGAGCAAAAGCTTCCGGAGAAGAAGATTCCCTCAACGCAGGCAAA 125 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTC-GAGGCCCTCCTTGTTGATCCACTTCATCGCCC 869357 ||| || |||||||| |||| ||| || | || |||||| | |||| Sbjct 126 TGCGACGATGCGCTCGGCGAAGGAGTCGGAAG-------AGTCGATCCAGCGGAGGGCCC 178 Query 869358 AGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTT 869417 ||| |||||| || | || | || | ||||| |||||| ||||||| || || | Sbjct 179 AGTTGGCCTTCTTGGTGACACAGGGAATGGTGTCAATGGCGTGAAAGAGACGGCTTTTCT 238 Query 869418 CGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 | | | ||| || | ||||| |||| ||||| Sbjct 239 CTACGGAGTCTTTTATGTAGGTTTCGAGGAGGAG 272 >seq46353 Length=13648 Score = 96.9 bits (106), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| |||||||| ||||| |||||| ||| || |||| || || Sbjct 5718 GCTGCGAACTACCTGAACATCAAGAGCCTGCTGGATCTTACATGCCAGACTGTAGCAGAC 5777 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || ||||| || ||||||||||||||||| ||| Sbjct 5778 ATGATCAAGGGGAAGACTCCAGAGGAAATTCGCAAGACCTTTAACATTAAG 5828 >seq170211 Length=424 Score = 87.8 bits (96), Expect = 2e-11 Identities = 153/216 (71%), Gaps = 9/216 (4%) Strand=Plus/Minus Query 1470039 GTGGTCGTCCCATATCATGACGC-GATCGTCGCGAAAGCACGGGCTGGCG-CCGCCGCCC 1470096 |||||||||||| |||||||| | | | | |||| ||||||| | |||||||| Sbjct 236 GTGGTCGTCCCAGATCATGACCTTGTTGGGAGGGAAATG--GGGCTGGGGTCCGCCGCCG 179 Query 1470097 ACCAGCGCGACGATGTTGGACCGGAAGAGCATGGTGGCGAGGCCCA---CGCCGCCGCCC 1470153 || || |||| ||||||| | ||||||||||| | || |||| | |||||||| | Sbjct 178 ACGAGGGCGATGATGTTGCATCGGAAGAGCATCTCGACGTGGCCGATTCCGCCGCCGTCA 119 Query 1470154 AGGTCGCGCTCGTAGCGCAGCGC-AAACGGGTCGGCATTCCACACGCGGAAGCCCTTGCG 1470212 | ||||| | | || ||| || |||| | ||| | | |||||| || ||| Sbjct 118 AACTCGCGGCGGAATTGC-TCGCTGAAGGGGTTGCAATTGTAGATGCGGAAACCGTTGTC 60 Query 1470213 TGTGGCCGCCGTGAGGCACGACTGGTCCTGGTTGAA 1470248 ||||| || | || ||| | ||||||||||||||| Sbjct 59 AGTGGCGGCGGAGAAGCAAGCCTGGTCCTGGTTGAA 24 >seq36327 Length=26407 Score = 87.8 bits (96), Expect = 2e-11 Identities = 153/216 (71%), Gaps = 9/216 (4%) Strand=Plus/Minus Query 1470039 GTGGTCGTCCCATATCATGACGC-GATCGTCGCGAAAGCACGGGCTGGCG-CCGCCGCCC 1470096 |||||||||||| |||||||| | | | | |||| ||||||| | |||||||| Sbjct 15290 GTGGTCGTCCCAGATCATGACCTTGTTGGGAGGGAAATG--GGGCTGGGGTCCGCCGCCG 15233 Query 1470097 ACCAGCGCGACGATGTTGGACCGGAAGAGCATGGTGGCGAGGCCCA---CGCCGCCGCCC 1470153 || || |||| ||||||| | ||||||||||| | || |||| | |||||||| | Sbjct 15232 ACGAGGGCGATGATGTTGCATCGGAAGAGCATCTCGACGTGGCCGATTCCGCCGCCGTCA 15173 Query 1470154 AGGTCGCGCTCGTAGCGCAGCGC-AAACGGGTCGGCATTCCACACGCGGAAGCCCTTGCG 1470212 | ||||| | | || ||| || |||| | ||| | | |||||| || ||| Sbjct 15172 AACTCGCGGCGGAATTGC-TCGCTGAAGGGGTTGCAATTGTAGATGCGGAAACCGTTGTC 15114 Query 1470213 TGTGGCCGCCGTGAGGCACGACTGGTCCTGGTTGAA 1470248 ||||| || | || ||| | ||||||||||||||| Sbjct 15113 AGTGGCGGCGGAGAAGCAAGCCTGGTCCTGGTTGAA 15078 >seq65218 Length=5182 Score = 86.0 bits (94), Expect = 8e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| ||||||||| |||||||||||||||||| |||| || || ||| Sbjct 126 GCCTTCTGGTACTCCCCCACGCGCTTCTCGAAAAAGTTGGTCTTCCCCTGCAGGGAAATC 67 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCG 868805 | ||||||||| ||||||||| || ||||| ||| |||| || |||| Sbjct 66 AGCTCCATCCAATCGAACGGGTTCTGCACATTGTACACCTTCCCGCACCCAAGCG 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6088753838744095