Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_022060.1
Length=54314
Score E
Sequences producing significant alignments: (Bits) Value
seq24349 495 1e-135
>seq24349
Length=3626
Score = 495 bits (548), Expect = 1e-135
Identities = 591/795 (74%), Gaps = 13/795 (2%)
Strand=Plus/Minus
Query 40623 GTGATGCTCGGGCAGGGCATGAACCTGCAGCAGGCCCACACCTGTGTGTACATGGGCATC 40682
||||||||||| ||||||||||||||||||||||| ||||| || | | | ||| ||
Sbjct 2299 GTGATGCTCGGCCAGGGCATGAACCTGCAGCAGGCGCACACGGCCGTCTTCGTCGGCGTC 2240
Query 40683 ACGCACAAGTTCAACGATCTAATCCAGAGCTTGCACCGGATTCAGCGGTTCGGCCAAACC 40742
|| |||| |||||||| |||||| | ||||||| || ||||| ||||| || |
Sbjct 2239 ACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCATCCAGCGCTTCGGACAG-CA 2181
Query 40743 CATC-CCTGCACAGCCCATTTGATCCACTCCGAGACCGAGCGGGAAGTGGTGCGGGTCAT 40801
| | ||||| | || ||||| || |||| |||||| || | | || | ||
Sbjct 2180 GAGCACCTGCGACGTGCACCTGATCTACGCCGAAACCGAGTCCGA---GATCCGCGACAC 2124
Query 40802 CCGC---GAGAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCGACATCATTCA 40858
|| | | ||| |||| | | ||| || | || || |||| |||| | || |
Sbjct 2123 CCTCCTGGCGAAGTGGGAAGAGCACGACCAGCTCACCGACACCATGAGCGACGTGATCCG 2064
Query 40859 TGAGTACGGACTTGACCCCGAGGCAATTTCGGAAGCGCTGCAACGCTCCATCGGATGTGA 40918
|||| |||||| |||||| || || || | || || ||| |||| || ||
Sbjct 2063 CGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTCACCCGCGCCATGGGCGTCGA 2004
Query 40919 GCGCATCGAAGCATCCGGTGAGGGATGGGTGTTCGTCAACAACGACTGCGTTCACGAAAC 40978
|||| ||||||||||||| || ||| | ||| |||||||||||| ||| ||
Sbjct 2003 GCGCGTCGAAGCATCCGGGCCCGGCTGGACGCTCGCGCTCAACGACTGCGTGATCGAGAC 1944
Query 40979 C---GAGAGAATGGCAGACGATTCGGTGGATCTGATTGTCACTAGCATTCCGTTCTCCAA 41035
| || ||||| || || || || ||||| ||||| || |||||||| ||
Sbjct 1943 CCGCGACCACATGGCCACGGACTCCGTCGACCTGATCGTCACGTCGATCCCGTTCTCGAA 1884
Query 41036 CCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACACCGACGACAACGCGCATTT 41095
||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1883 CCACTACGAGTACACCCCCAGCTACAACGACTTCGGCCACACCGACGACAACCTGCACTT 1824
Query 41096 CTGGGCGCAGATGGACTACCTCACACCGCAGCTGCTGCGCATCCTCGCG-CCGGGCCGTA 41154
|||| |||||||||||||||||| ||| |||| ||||| | || ||| || || || |
Sbjct 1823 CTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGCGGGTGCT-GCGTCCAGGACGGA 1765
Query 41155 TCTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGGAAACGTCACCGGCGCCGGCGTGC 41214
|||| ||||||||||| ||||| || ||| |||||| ||||||||||| |||||| | |
Sbjct 1764 TCTATGCCTGCCACGTGAAGGATCGAATCCAGTTCGGCAACGTCACCGGAGCCGGCATCC 1705
Query 41215 CCACAGTGTCCCCGTTCCACGCCGAGGCGATCTTCCACGGCCGCAAACACGGCTTCGACT 41274
|||| || || |||||||||||||| ||| || ||||||| ||| || ||||||||||
Sbjct 1704 CCACCGTCTCACCGTTCCACGCCGAAGCGCTCGCGCACGGCCTCAAGCATGGCTTCGACT 1645
Query 41275 ACCTCGGCATGATCACCGTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGC 41334
|| | |||||||||||||| |||||| || ||||| || ||||||||||| ||||| |
Sbjct 1644 ACATGGGCATGATCACCGTCACCACCGACGTCGTGCGCGAGAACAACCAGACCTACCGCC 1585
Query 41335 TGGGCTGGTCGGAGCAGTGCAAAGACGCCACCAAGATGGGTGTCGGCTCCCCGGAATACA 41394
| |||| ||||| | |||| |||| ||| |||||||| |||||||| || || ||||
Sbjct 1584 TCGGCTACGCGGAGATGCGCAAGGACGGCACGAAGATGGGCGTCGGCTCACCCGAGTACA 1525
Query 41395 TTCTGCTGTTCCACA 41409
| ||||| |||||||
Sbjct 1524 TCCTGCTCTTCCACA 1510
Score = 147 bits (162), Expect = 8e-31
Identities = 177/237 (75%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 39854 CGGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC-ACTG- 39911
||| ||||| |||| ||||| ||||| || |||||||| | | ||| | || |
Sbjct 3194 CGGCATCTACGTCACGAACTACGAGAGCGTGCGCGACGGCCGCCTCG--CCGTCGACGGC 3137
Query 39912 TTCACGGCCGTCTCACTCGATGAGGCCAGCGTGTTGCGGTCTTTCGGGTCCAAGACCTAC 39971
||| || ||| ||||| ||||| |||| |||| || ||||| || |||||||||
Sbjct 3136 TTCGACGCGGTCAGCCTCGACGAGGCATCCGTGCTGCGCTCCTTCGGATCGAAGACCTAC 3077
Query 39972 CAGTCGTTCCTAGAGCTGTTCGACGCGGTTCCCTACCGGTACGTCGCGACGGCCACGCCG 40031
||| |||||| | |||||||||| | | || ||||| | ||| || || || ||||||
Sbjct 3076 CAGGAGTTCCTCGGCCTGTTCGACGAGATCCCGTACCGCTTCGTGGCCACCGCGACGCCG 3017
Query 40032 TCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGTTATCTCGGGGTGATGGAC 40088
||||| |||||| ||||||||||||| |||||||| || | ||||| | ||||||
Sbjct 3016 TCACCCAACCGGCACAAGGAGCTGATCCACTACGCCGGGTTCCTCGGCCTCATGGAC 2960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 173221130500920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |