Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq222699 199 6e-45 seq205188 190 3e-42 >seq222699 Length=2956 Score = 199 bits (220), Expect = 6e-45 Identities = 229/307 (75%), Gaps = 7/307 (2%) Strand=Plus/Minus Query 794361 TTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACA 794420 ||||||| ||| |||||||||||| | |||||||||||| |||||||| || | || Sbjct 628 TTCGTTGGAGAAGGTGAGGCCGGGCATCAAGCCGCGCTTCTTTAGCCAAAATATCGAGCA 569 Query 794421 GAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAA 794480 ||| ||||| ||||| ||||| ||||||||| ||| ||| ||||||| ||||||||||| Sbjct 568 GAAGCTGCCGGAGAAGAAGATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCAAA 509 Query 794481 AGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGA 794540 | ||| | | || |||||| || ||||| | ||||| || || | Sbjct 508 GGAGTCGGTGGCATC------GATCCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACA 455 Query 794541 GGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGT 794600 ||| | || || | |||||| || ||||| | ||| ||| | ||| |||| |||||| Sbjct 454 GGGGATGGTATCTACGGCGCGGAACAGGTGATTCTTTTCGGTGGAGTCTTTGATGTAGGT 395 Query 794601 GTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATA 794660 || | |||||| ||| |||| ||||||||||| |||||||||||||||||||| || Sbjct 394 TTCCAAGAGGAGACTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTA 335 Query 794661 -AAAGCA 794666 |||||| Sbjct 334 GAAAGCA 328 Score = 176 bits (194), Expect = 7e-38 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| |||||| ||||||||||||||| |||| ||||| || |||||||| Sbjct 325 GGCCTCGGCGGCTTGGATTTCCTTCATGAAGCGGGCGGCGAGGTTTTCGAGAACGATGCC 266 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| |||||| || |||||||||||||| |||| |||| |||||| ||||| |||| Sbjct 265 GTCGGAGGCGGCAAAGAAGGCGAGGACGTGGGTGATGAAGTAGCGCTCGCCGTCGGTGAG 206 Query 796269 CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 ||| |||||||| ||| | || || ||||| ||||||||||| || ||||| Sbjct 205 GGAGTCCCAGTGGCGGAGGTCTTGGGAAAGATCAACCTCTTCGGCGGTCCAGAAAGAGGC 146 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||||| || |||||||| ||||| || | |||| |||| ||||||| Sbjct 145 TTCGGCTTTCTTGTACATTTCCCAAATTTGGGGGTATTGGATTGGGAACA 96 >seq205188 Length=846 Score = 190 bits (210), Expect = 3e-42 Identities = 238/325 (73%), Gaps = 6/325 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| |||||||| ||| | ||||||| ||| ||| || ||||||||||| || || Sbjct 6 ACCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCTGGCATGAGGCCCCGTTT 65 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| || || || || ||||| ||||| ||||| ||| |||||| Sbjct 66 CTTGAGCCAGAAGATGGAGCAAAAGCTTCCGGAGAAGAAGATTCCCTCAACGCAGGCAAA 125 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 |||||| |||||||| || | ||| || || |||||| | ||||| Sbjct 126 TGCGACGATGCGCTCGGCGAAGGAGTC--GG----AAGAGTCGATCCAGCGGAGGGCCCA 179 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 | ||||| || | || |||| | ||||| |||||| ||||||| || ||||| Sbjct 180 GTTGGCCTTCTTGGTGACACAGGGAATGGTGTCAATGGCGTGAAAGAGACGGCTTTTCTC 239 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 || | ||| || | |||||| |||| |||||| ||| |||| ||||| ||||| || Sbjct 240 TACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTACATCTCGGAGTGAATGTTCTC 299 Query 794640 GATGGCGATCTGGAAGCCATAAAAG 794664 |||||||||||||||||| |||||| Sbjct 300 GATGGCGATCTGGAAGCCGTAAAAG 324 Score = 168 bits (186), Expect = 1e-35 Identities = 189/250 (76%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| || |||||||||||||| || |||||||| ||||| || |||||||| Sbjct 330 GGCCTCGGAGACCTGGACCTCCTTCATAAAACGGCCGGCGAGGTTTTCGAGTACGATGCC 389 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| ||||||||| ||||| |||||||| |||| || || |||||| ||||| |||| Sbjct 390 GTCGGAGGCGGCGAAGAAGGCAAGGACGTGGGTGATGAAATGGCGCTCGCCGTCGGTGAG 449 Query 796269 CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | | ||| ||| |||| ||| ||||||||||| || ||||| || ||||| Sbjct 450 AGTGTTCCAATGGCTGATGTCCTGAGAGAGATCGACCTCCTCCGCCGTCCAGAACGAGGC 509 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA-GAACAAAGC 796387 || || || |||||||| ||||| || | |||| |||| ||||||| | | ||| | Sbjct 510 TTCTGCTTTCTTGTACATTTCCCAGATTTGGGGGTATTGGATAGGGAACATGCAGAAA-C 568 Query 796388 GATTGGGGTT 796397 ||| ||||| Sbjct 569 GATCAGGGTT 578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7892414775226365