Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq39107 89.7 8e-13 seq158136 87.8 3e-12 >seq39107 Length=55737 Score = 89.7 bits (98), Expect = 8e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || | |||||||| || ||||| | || || || | Sbjct 30105 TGCAGATATTTGTGAAGACTCTGACAGGAAAGACCATTACCTTGGAGGTGGAGAGCTCTG 30164 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| || || ||| || || ||||||||||| ||||| | Sbjct 30165 ATACAATTGATAATGTGAAAGCAAAGATTCAAGACAAGGAGGGCATTCCACCAGATCAGC 30224 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || |||||||| || ||| | | || || |||| || || | Sbjct 30225 AGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAACA 30284 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | || || ||||| || |||| Sbjct 30285 TTCAGAAGGAATCCACCCTCCA 30306 Score = 86.0 bits (94), Expect = 1e-11 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || | |||||||| || ||||| | || || || | Sbjct 26782 TGCAGATATTTGTGAAGACTCTGACAGGAAAGACCATTACCTTGGAGGTGGAGAGCTCTG 26841 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| || || || || || ||||||||||| ||||| | Sbjct 26842 ATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCAGC 26901 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || |||||||| || ||| | | || || |||| || || | Sbjct 26902 AGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAACA 26961 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | || || ||||| || |||| Sbjct 26962 TTCAGAAGGAATCCACCCTCCA 26983 Score = 86.0 bits (94), Expect = 1e-11 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || | |||||||| || ||||| | || || || | Sbjct 41619 TGCAGATATTTGTGAAGACTCTGACAGGAAAGACCATTACCTTGGAGGTGGAGAGCTCTG 41678 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| || || || || || ||||||||||| ||||| | Sbjct 41679 ATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCAGC 41738 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || |||||||| || ||| | | || || |||| || || | Sbjct 41739 AGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAACA 41798 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | || || ||||| || |||| Sbjct 41799 TTCAGAAGGAATCCACCCTCCA 41820 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| || || || || || || || |||| |||||| | Sbjct 40935 TGCAGATCTTTGTGAAAACTTTGACTGGCAAGACCATCACCCTTGAAGTAGAATCGTCTG 40994 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || ||| || || ||||| || || || || ||||||| Sbjct 40995 ACACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAAC 41054 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | |||||||| ||||||||| | || ||| ||||| | | ||||| |||| Sbjct 41055 AAAGGTTAATTTTTGCTGGTAAACAACTCGAGGATGGGAGAACCCTTGCCGATTACAATA 41114 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || || |||| || || | || || || || || Sbjct 41115 TTCAGAAGGAGTCCACGCTCCACTTGGTGCTTCGTTTGAGGGGTGG 41160 >seq158136 Length=352 Score = 87.8 bits (96), Expect = 3e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || ||||| || ||||| ||||| ||| |||| || ||| | Sbjct 22 TGCAAATCTTTGTGAAGACATTGACGGGAAAGACAATCACTCTTGAAGTGGAAAGCTCTG 81 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || ||| || || ||||| || || ||||| || || | Sbjct 82 ACACCATTGACAATGTCAAGGCTAAGATTCAGGACAAAGAGGGTATCCCACCAGACCAGC 141 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| ||||||||||| || ||||| | || ||| |||| | | ||||| || | Sbjct 142 AAAGGCTCATTTTTGCTGGAAAACAGCTTGAGGATGGCCGAACCCTTGCCGATTACAACA 201 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || ||||| || || | ||||| || Sbjct 202 TTCAGAAAGAGTCTACCCTGCATTTGGT 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783964790132200