Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_023580.1 Length=57775 Score E Sequences producing significant alignments: (Bits) Value seq24349 439 9e-119 >seq24349 Length=3626 Score = 439 bits (486), Expect = 9e-119 Identities = 578/794 (73%), Gaps = 13/794 (2%) Strand=Plus/Minus Query 44911 GGTGATGCTTGGGCAGGGCATGAACCTGCAGCAGGCCCACACCTGTGTGTACATGGGCAT 44970 ||||||||| || ||||||||||||||||||||||| ||||| || | | | ||| | Sbjct 2300 GGTGATGCTCGGCCAGGGCATGAACCTGCAGCAGGCGCACACGGCCGTCTTCGTCGGCGT 2241 Query 44971 CACGCACAAGTTCAACGATCTAATCCAGAGCTTGCACCGGATTCAGCGTTTCGGCCAAAC 45030 ||| |||| |||||||| |||||| | ||||||| || ||||| ||||| || | Sbjct 2240 CACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCATCCAGCGCTTCGGACAG-C 2182 Query 45031 CCATC-CCTGCACAGCCCATTTGATCCACTCCGAGACCGAGCGGGAAGTGGTGCGGGTCA 45089 | | ||||| | || ||||| || |||| |||||| || | | || | || Sbjct 2181 AGAGCACCTGCGACGTGCACCTGATCTACGCCGAAACCGAGTCCGA---GATCCGCGACA 2125 Query 45090 TCCGC---GAGAAATGGGCACAACACCGAGAGTTGACATCAACTATGACTGACATAATCC 45146 || | | ||| |||| | | ||| || | || || |||| ||| | |||| Sbjct 2124 CCCTCCTGGCGAAGTGGGAAGAGCACGACCAGCTCACCGACACCATGAGCGACGTGATCC 2065 Query 45147 ACGAATACGGGCTTGACCCCGAGGCAATCTCGGAAGCTCTGCAACGGTCCATCGGATGCG 45206 ||| | ||| || |||||| || ||||| | || || || |||| || || Sbjct 2064 GCGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTCACCCGCGCCATGGGCGTCG 2005 Query 45207 AACGAATCGAAGCATCCGGCGAGGGCTGGCTGTTCGCCAACAACGACTGCGTACCCGAAA 45266 | || ||||||||||||| |||||| | |||| |||||||||||| ||| | Sbjct 2004 AGCGCGTCGAAGCATCCGGGCCCGGCTGGACGCTCGCGCTCAACGACTGCGTGATCGAGA 1945 Query 45267 CC---GAGTCGATGGACGACAACTCGGTGGACCTGATCGTCACCAGTATTCCGTTCTCCA 45323 || || |||| | |||| || |||||||||||||| || |||||||| | Sbjct 1944 CCCGCGACCACATGGCCACGGACTCCGTCGACCTGATCGTCACGTCGATCCCGTTCTCGA 1885 Query 45324 ATCACTACGAATACACCCCGTCCTACAACGACTTCGGTCACACCGACGACAACGCGCATT 45383 | |||||||| |||||||| ||||||||||||||| ||||||||||||||| ||| | Sbjct 1884 ACCACTACGAGTACACCCCCAGCTACAACGACTTCGGCCACACCGACGACAACCTGCACT 1825 Query 45384 TCTGGGCGCAAATGGACTACCTCACACCGCAACTGTTGCGCATCCTTGCGCCCGGG-CGG 45442 ||||| ||| |||||||||||||| ||| | || |||| | || ||| || || ||| Sbjct 1824 TCTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGCGGGTGCT-GCGTCCAGGACGG 1766 Query 45443 ATCTACGCCTGCCACGTCAAAGACCGCATCTTGTTCGGCAATGTCACCGGCGCTGGCGTG 45502 ||||| ||||||||||| || || || ||| ||||||||| |||||||| || ||| | Sbjct 1765 ATCTATGCCTGCCACGTGAAGGATCGAATCCAGTTCGGCAACGTCACCGGAGCCGGCATC 1706 Query 45503 CCCACCGTGTCACCATTTCACGCCGAAGCGATCTTCCACGGCCGCAAACACGGCTTTGAC 45562 |||||||| ||||| || |||||||||||| || ||||||| ||| || ||||| ||| Sbjct 1705 CCCACCGTCTCACCGTTCCACGCCGAAGCGCTCGCGCACGGCCTCAAGCATGGCTTCGAC 1646 Query 45563 TACCTCGGCATGATCACCGTTGTCACCGATGTGGTACGGGAAAACAACCAGACGTACCGG 45622 ||| | |||||||||||||| |||||| || || || || ||||||||||| ||||| Sbjct 1645 TACATGGGCATGATCACCGTCACCACCGACGTCGTGCGCGAGAACAACCAGACCTACCGC 1586 Query 45623 TTGGGTTGGTCCGAGCAGTGCAAAGACGCCACCAAGATGGGCGTTGGCTCCCCGGAATAC 45682 | || | | ||| | |||| |||| ||| ||||||||||| ||||| || || ||| Sbjct 1585 CTCGGCTACGCGGAGATGCGCAAGGACGGCACGAAGATGGGCGTCGGCTCACCCGAGTAC 1526 Query 45683 GTTCTGCTGTTCCA 45696 | ||||| ||||| Sbjct 1525 ATCCTGCTCTTCCA 1512 Score = 147 bits (162), Expect = 8e-31 Identities = 177/237 (75%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 44143 CGGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC-ACTG- 44200 ||| ||||| |||| ||||| ||||| || |||||||| | | ||| | || | Sbjct 3194 CGGCATCTACGTCACGAACTACGAGAGCGTGCGCGACGGCCGCCTCG--CCGTCGACGGC 3137 Query 44201 TTCACGGCCGTCTCACTCGATGAGGCCAGCGTGTTGCGGTCTTTCGGGTCCAAGACCTAC 44260 ||| || ||| ||||| ||||| |||| |||| || ||||| || ||||||||| Sbjct 3136 TTCGACGCGGTCAGCCTCGACGAGGCATCCGTGCTGCGCTCCTTCGGATCGAAGACCTAC 3077 Query 44261 CAGTCGTTCCTAGAGCTGTTCGACGCGGTTCCCTACCGGTACGTCGCGACGGCCACGCCG 44320 ||| |||||| | |||||||||| | | || ||||| | ||| || || || |||||| Sbjct 3076 CAGGAGTTCCTCGGCCTGTTCGACGAGATCCCGTACCGCTTCGTGGCCACCGCGACGCCG 3017 Query 44321 TCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGTTATCTCGGGGTGATGGAC 44377 ||||| |||||| ||||||||||||| |||||||| || | ||||| | |||||| Sbjct 3016 TCACCCAACCGGCACAAGGAGCTGATCCACTACGCCGGGTTCCTCGGCCTCATGGAC 2960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184266865865790