Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_023580.1
Length=57775
Score E
Sequences producing significant alignments: (Bits) Value
seq24349 439 9e-119
>seq24349
Length=3626
Score = 439 bits (486), Expect = 9e-119
Identities = 578/794 (73%), Gaps = 13/794 (2%)
Strand=Plus/Minus
Query 44911 GGTGATGCTTGGGCAGGGCATGAACCTGCAGCAGGCCCACACCTGTGTGTACATGGGCAT 44970
||||||||| || ||||||||||||||||||||||| ||||| || | | | ||| |
Sbjct 2300 GGTGATGCTCGGCCAGGGCATGAACCTGCAGCAGGCGCACACGGCCGTCTTCGTCGGCGT 2241
Query 44971 CACGCACAAGTTCAACGATCTAATCCAGAGCTTGCACCGGATTCAGCGTTTCGGCCAAAC 45030
||| |||| |||||||| |||||| | ||||||| || ||||| ||||| || |
Sbjct 2240 CACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCATCCAGCGCTTCGGACAG-C 2182
Query 45031 CCATC-CCTGCACAGCCCATTTGATCCACTCCGAGACCGAGCGGGAAGTGGTGCGGGTCA 45089
| | ||||| | || ||||| || |||| |||||| || | | || | ||
Sbjct 2181 AGAGCACCTGCGACGTGCACCTGATCTACGCCGAAACCGAGTCCGA---GATCCGCGACA 2125
Query 45090 TCCGC---GAGAAATGGGCACAACACCGAGAGTTGACATCAACTATGACTGACATAATCC 45146
|| | | ||| |||| | | ||| || | || || |||| ||| | ||||
Sbjct 2124 CCCTCCTGGCGAAGTGGGAAGAGCACGACCAGCTCACCGACACCATGAGCGACGTGATCC 2065
Query 45147 ACGAATACGGGCTTGACCCCGAGGCAATCTCGGAAGCTCTGCAACGGTCCATCGGATGCG 45206
||| | ||| || |||||| || ||||| | || || || |||| || ||
Sbjct 2064 GCGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTCACCCGCGCCATGGGCGTCG 2005
Query 45207 AACGAATCGAAGCATCCGGCGAGGGCTGGCTGTTCGCCAACAACGACTGCGTACCCGAAA 45266
| || ||||||||||||| |||||| | |||| |||||||||||| ||| |
Sbjct 2004 AGCGCGTCGAAGCATCCGGGCCCGGCTGGACGCTCGCGCTCAACGACTGCGTGATCGAGA 1945
Query 45267 CC---GAGTCGATGGACGACAACTCGGTGGACCTGATCGTCACCAGTATTCCGTTCTCCA 45323
|| || |||| | |||| || |||||||||||||| || |||||||| |
Sbjct 1944 CCCGCGACCACATGGCCACGGACTCCGTCGACCTGATCGTCACGTCGATCCCGTTCTCGA 1885
Query 45324 ATCACTACGAATACACCCCGTCCTACAACGACTTCGGTCACACCGACGACAACGCGCATT 45383
| |||||||| |||||||| ||||||||||||||| ||||||||||||||| ||| |
Sbjct 1884 ACCACTACGAGTACACCCCCAGCTACAACGACTTCGGCCACACCGACGACAACCTGCACT 1825
Query 45384 TCTGGGCGCAAATGGACTACCTCACACCGCAACTGTTGCGCATCCTTGCGCCCGGG-CGG 45442
||||| ||| |||||||||||||| ||| | || |||| | || ||| || || |||
Sbjct 1824 TCTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGCGGGTGCT-GCGTCCAGGACGG 1766
Query 45443 ATCTACGCCTGCCACGTCAAAGACCGCATCTTGTTCGGCAATGTCACCGGCGCTGGCGTG 45502
||||| ||||||||||| || || || ||| ||||||||| |||||||| || ||| |
Sbjct 1765 ATCTATGCCTGCCACGTGAAGGATCGAATCCAGTTCGGCAACGTCACCGGAGCCGGCATC 1706
Query 45503 CCCACCGTGTCACCATTTCACGCCGAAGCGATCTTCCACGGCCGCAAACACGGCTTTGAC 45562
|||||||| ||||| || |||||||||||| || ||||||| ||| || ||||| |||
Sbjct 1705 CCCACCGTCTCACCGTTCCACGCCGAAGCGCTCGCGCACGGCCTCAAGCATGGCTTCGAC 1646
Query 45563 TACCTCGGCATGATCACCGTTGTCACCGATGTGGTACGGGAAAACAACCAGACGTACCGG 45622
||| | |||||||||||||| |||||| || || || || ||||||||||| |||||
Sbjct 1645 TACATGGGCATGATCACCGTCACCACCGACGTCGTGCGCGAGAACAACCAGACCTACCGC 1586
Query 45623 TTGGGTTGGTCCGAGCAGTGCAAAGACGCCACCAAGATGGGCGTTGGCTCCCCGGAATAC 45682
| || | | ||| | |||| |||| ||| ||||||||||| ||||| || || |||
Sbjct 1585 CTCGGCTACGCGGAGATGCGCAAGGACGGCACGAAGATGGGCGTCGGCTCACCCGAGTAC 1526
Query 45683 GTTCTGCTGTTCCA 45696
| ||||| |||||
Sbjct 1525 ATCCTGCTCTTCCA 1512
Score = 147 bits (162), Expect = 8e-31
Identities = 177/237 (75%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 44143 CGGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC-ACTG- 44200
||| ||||| |||| ||||| ||||| || |||||||| | | ||| | || |
Sbjct 3194 CGGCATCTACGTCACGAACTACGAGAGCGTGCGCGACGGCCGCCTCG--CCGTCGACGGC 3137
Query 44201 TTCACGGCCGTCTCACTCGATGAGGCCAGCGTGTTGCGGTCTTTCGGGTCCAAGACCTAC 44260
||| || ||| ||||| ||||| |||| |||| || ||||| || |||||||||
Sbjct 3136 TTCGACGCGGTCAGCCTCGACGAGGCATCCGTGCTGCGCTCCTTCGGATCGAAGACCTAC 3077
Query 44261 CAGTCGTTCCTAGAGCTGTTCGACGCGGTTCCCTACCGGTACGTCGCGACGGCCACGCCG 44320
||| |||||| | |||||||||| | | || ||||| | ||| || || || ||||||
Sbjct 3076 CAGGAGTTCCTCGGCCTGTTCGACGAGATCCCGTACCGCTTCGTGGCCACCGCGACGCCG 3017
Query 44321 TCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGTTATCTCGGGGTGATGGAC 44377
||||| |||||| ||||||||||||| |||||||| || | ||||| | ||||||
Sbjct 3016 TCACCCAACCGGCACAAGGAGCTGATCCACTACGCCGGGTTCCTCGGCCTCATGGAC 2960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 184266865865790
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |