Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_023729.1 Length=43036 Score E Sequences producing significant alignments: (Bits) Value seq24349 495 1e-135 >seq24349 Length=3626 Score = 495 bits (548), Expect = 1e-135 Identities = 591/795 (74%), Gaps = 13/795 (2%) Strand=Plus/Minus Query 36064 GTGATGCTCGGGCAAGGCATGAACCTGCAGCAGGCCCACACCTGTGTGTACATCGGCATC 36123 ||||||||||| || |||||||||||||||||||| ||||| || | | ||||| || Sbjct 2299 GTGATGCTCGGCCAGGGCATGAACCTGCAGCAGGCGCACACGGCCGTCTTCGTCGGCGTC 2240 Query 36124 ACGCACAAGTTCAACGATCTAATCCAGAGCTTGCACCGGATTCAGCGGTTCGGCCAAACC 36183 || |||| |||||||| |||||| | ||||||| || ||||| ||||| || | Sbjct 2239 ACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCATCCAGCGCTTCGGACAG-CA 2181 Query 36184 CATC-CCTGCAAAGCCCATTTGATCCACTCCGAAACCGAGCGGGAAGTGGTGCGGGTCAT 36242 | | ||||| | | || ||||| || ||||||||||| || | | || | || Sbjct 2180 GAGCACCTGCGACGTGCACCTGATCTACGCCGAAACCGAGTCCGA---GATCCGCGACAC 2124 Query 36243 CCGC---GAGAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCACCATCATTCA 36299 || | | ||| |||| | | ||| || | || || |||| | | | || | Sbjct 2123 CCTCCTGGCGAAGTGGGAAGAGCACGACCAGCTCACCGACACCATGAGCGACGTGATCCG 2064 Query 36300 TGAGTACGGACTTGACCCCGAGGCAATTTCGGAAGCGCTGCAACGCTCCATCGGATGCGA 36359 |||| |||||| |||||| || || || | || || ||| |||| || ||| Sbjct 2063 CGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTCACCCGCGCCATGGGCGTCGA 2004 Query 36360 ACGCATCGAAACATCCGGTGAGGGATGGGTGTTCGCCAACAACGACTGCGTTCACGAAAC 36419 ||| ||||| ||||||| || ||| | |||| |||||||||||| ||| || Sbjct 2003 GCGCGTCGAAGCATCCGGGCCCGGCTGGACGCTCGCGCTCAACGACTGCGTGATCGAGAC 1944 Query 36420 C---GAGAGAATGGCAGACGATTCGGTGGATCTGATTGTCACCAGCATTCCGTTCTCCAA 36476 | || ||||| || || || || ||||| ||||| || |||||||| || Sbjct 1943 CCGCGACCACATGGCCACGGACTCCGTCGACCTGATCGTCACGTCGATCCCGTTCTCGAA 1884 Query 36477 CCACTACGAGTACACGCCGAGCTACAACGATTTCGGCCACACCGACGACAACGCGCATTT 36536 ||||||||||||||| || ||||||||||| ||||||||||||||||||||| ||| || Sbjct 1883 CCACTACGAGTACACCCCCAGCTACAACGACTTCGGCCACACCGACGACAACCTGCACTT 1824 Query 36537 CTGGGCGCAGATGGACTACCTCACACCGCAGCTGCTGCGCATCCTCGCG-CCGGGCCGTA 36595 |||| |||||||||||||||||| ||| |||| ||||| | || ||| || || || | Sbjct 1823 CTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGCGGGTGCT-GCGTCCAGGACGGA 1765 Query 36596 TCTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGGCAACGTCACCGGCGCCGGCGTGC 36655 |||| ||||||||||| ||||| || ||| |||||||||||||||||| |||||| | | Sbjct 1764 TCTATGCCTGCCACGTGAAGGATCGAATCCAGTTCGGCAACGTCACCGGAGCCGGCATCC 1705 Query 36656 CCACCGTGTCCCCGTTTCACGCCGAGGCGATCTTCCACGGCCGCAAACACGGCTTCGACT 36715 ||||||| || ||||| |||||||| ||| || ||||||| ||| || |||||||||| Sbjct 1704 CCACCGTCTCACCGTTCCACGCCGAAGCGCTCGCGCACGGCCTCAAGCATGGCTTCGACT 1645 Query 36716 ACCTCGGCATGATCACCGTCGTAACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGC 36775 || | ||||||||||||||| ||||| || ||||| || ||||||||||| ||||| | Sbjct 1644 ACATGGGCATGATCACCGTCACCACCGACGTCGTGCGCGAGAACAACCAGACCTACCGCC 1585 Query 36776 TGGGCTGGTCCGAGCAGTGCAAAGACGCCACCAAGATGGGCGTCGGCTCCCCGGAATACA 36835 | |||| | ||| | |||| |||| ||| ||||||||||||||||| || || |||| Sbjct 1584 TCGGCTACGCGGAGATGCGCAAGGACGGCACGAAGATGGGCGTCGGCTCACCCGAGTACA 1525 Query 36836 TTCTGCTGTTCCACA 36850 | ||||| ||||||| Sbjct 1524 TCCTGCTCTTCCACA 1510 Score = 167 bits (184), Expect = 6e-37 Identities = 216/295 (73%), Gaps = 10/295 (3%) Strand=Plus/Minus Query 35243 TGCTAGGCATCGAAACCCGGTTCGTTCGCCGCACAGAAGAAGTCGGCGGCGAC------G 35296 |||| || | ||| ||| ||| | |||||||| || || ||| | | || | Sbjct 3252 TGCTCGGAACCGAGGTCCGCTTCATCCGCCGCACCGATGACATCGACCCCAACTGGTCCG 3193 Query 35297 GAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC-ACTG-TT 35354 | ||||| |||| ||||| ||||| || |||||||| | | ||| | || | || Sbjct 3192 GCATCTACGTCACGAACTACGAGAGCGTGCGCGACGGCCGCCTCG--CCGTCGACGGCTT 3135 Query 35355 CACGGCCGTCTCACTCGACGAGGCGAGCGTGCTGCGCTCGTTCGGGTCCAAGACCTACCA 35414 | || ||| ||||||||||| |||||||||||| ||||| || ||||||||||| Sbjct 3134 CGACGCGGTCAGCCTCGACGAGGCATCCGTGCTGCGCTCCTTCGGATCGAAGACCTACCA 3075 Query 35415 GTCGTTCCTCGAGCTGTTCGACGCGGTGCCCTACCGGTACGTCGCCACCGCCACACCCTC 35474 | |||||||| |||||||||| | | || ||||| | ||| |||||||| || || || Sbjct 3074 GGAGTTCCTCGGCCTGTTCGACGAGATCCCGTACCGCTTCGTGGCCACCGCGACGCCGTC 3015 Query 35475 GCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGCTATCTCGGGGTGATGGAC 35529 || |||||| |||||||||||||||||||||| || | ||||| | |||||| Sbjct 3014 ACCCAACCGGCACAAGGAGCTGATCCACTACGCCGGGTTCCTCGGCCTCATGGAC 2960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137227543836660