Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_023746.1 Length=57387 Score E Sequences producing significant alignments: (Bits) Value seq24349 489 6e-134 seq73813 86.0 2e-12 >seq24349 Length=3626 Score = 489 bits (542), Expect = 6e-134 Identities = 590/795 (74%), Gaps = 13/795 (2%) Strand=Plus/Minus Query 43151 GTGATGCTCGGGCAGGGCATGAACCTGCAGCAGGCCCACACCTGTGTGTACATGGGCATC 43210 ||||||||||| ||||||||||||||||||||||| ||||| || | | | ||| || Sbjct 2299 GTGATGCTCGGCCAGGGCATGAACCTGCAGCAGGCGCACACGGCCGTCTTCGTCGGCGTC 2240 Query 43211 ACGCACAAGTTCAACGATCTAATCCAGAGCTTGCACCGGATTCAGCGGTTCGGCCAAACC 43270 || |||| |||||||| |||||| | ||||||| || ||||| ||||| || | Sbjct 2239 ACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCATCCAGCGCTTCGGACAG-CA 2181 Query 43271 CATC-CCTGCACAGCCCATTTGATCCACTCCGAGACCGAGCGGGAAGTGGTGCGGGTCAT 43329 | | ||||| | || ||||| || |||| |||||| || | | || | || Sbjct 2180 GAGCACCTGCGACGTGCACCTGATCTACGCCGAAACCGAGTCCGA---GATCCGCGACAC 2124 Query 43330 CCGC---GAGAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCGACATCATTCA 43386 || | | ||| |||| | | ||| || | || || |||| |||| | || | Sbjct 2123 CCTCCTGGCGAAGTGGGAAGAGCACGACCAGCTCACCGACACCATGAGCGACGTGATCCG 2064 Query 43387 TGAGTACGGACTTGACCCCGAGGCAATTTCGGAAGCGCTGCAACGCTCCATCGGATGTGA 43446 |||| |||||| |||||| || || || | || || ||| |||| || || Sbjct 2063 CGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTCACCCGCGCCATGGGCGTCGA 2004 Query 43447 GCGCATCGAAGCATCCGGTGAGGGATGGGTGTTCGTCAACAACGACTGCGTTCACGAAAC 43506 |||| ||||||||||||| || ||| | ||| |||||||||||| ||| || Sbjct 2003 GCGCGTCGAAGCATCCGGGCCCGGCTGGACGCTCGCGCTCAACGACTGCGTGATCGAGAC 1944 Query 43507 C---GAGAGAATGGCAGACGATTCGGTGGATCTGATTGTCACTAGCATTCCGTTCTCCAA 43563 | || ||||| || || || || ||||| ||||| || |||||||| || Sbjct 1943 CCGCGACCACATGGCCACGGACTCCGTCGACCTGATCGTCACGTCGATCCCGTTCTCGAA 1884 Query 43564 CCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACACCGACGACAACGCGCATTT 43623 ||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| || Sbjct 1883 CCACTACGAGTACACCCCCAGCTACAACGACTTCGGCCACACCGACGACAACCTGCACTT 1824 Query 43624 CTGGGCGCAGATGGACTACCTCACACCGCAGCTGCTGCGCATCCTCGCG-CCGGGCCGTA 43682 |||| |||||||||||||||||| ||| |||| ||||| | || ||| || || || | Sbjct 1823 CTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGCGGGTGCT-GCGTCCAGGACGGA 1765 Query 43683 TCTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGGAAACGTCACCGGCGCCGGCGTGC 43742 |||| ||||||||||| ||||| || ||| |||||| ||||||||||| |||||| | | Sbjct 1764 TCTATGCCTGCCACGTGAAGGATCGAATCCAGTTCGGCAACGTCACCGGAGCCGGCATCC 1705 Query 43743 CCACAGTGTCCCCGTTCCACGCCGAGGCGATCTTCCACGGCCGCAAACACGGCTTCGACT 43802 |||| || || |||||||||||||| ||| || ||||||| ||| || |||||||||| Sbjct 1704 CCACCGTCTCACCGTTCCACGCCGAAGCGCTCGCGCACGGCCTCAAGCATGGCTTCGACT 1645 Query 43803 ACCTCGGCATGATCACCGTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGC 43862 || | |||||||||||||| |||||| || ||||| || ||||||||||| ||||| | Sbjct 1644 ACATGGGCATGATCACCGTCACCACCGACGTCGTGCGCGAGAACAACCAGACCTACCGCC 1585 Query 43863 TGGGCTGGTCGGAGCAGTGCAAAGACGCCACCAAGATGGGTGTCGGCTCCCCGGAATACG 43922 | |||| ||||| | |||| |||| ||| |||||||| |||||||| || || ||| Sbjct 1584 TCGGCTACGCGGAGATGCGCAAGGACGGCACGAAGATGGGCGTCGGCTCACCCGAGTACA 1525 Query 43923 TTCTGCTGTTCCACA 43937 | ||||| ||||||| Sbjct 1524 TCCTGCTCTTCCACA 1510 Score = 147 bits (162), Expect = 8e-31 Identities = 177/237 (75%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 42382 CGGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC-ACTG- 42439 ||| ||||| |||| ||||| ||||| || |||||||| | | ||| | || | Sbjct 3194 CGGCATCTACGTCACGAACTACGAGAGCGTGCGCGACGGCCGCCTCG--CCGTCGACGGC 3137 Query 42440 TTCACGGCCGTCTCACTCGATGAGGCCAGCGTGTTGCGGTCTTTCGGGTCCAAGACCTAC 42499 ||| || ||| ||||| ||||| |||| |||| || ||||| || ||||||||| Sbjct 3136 TTCGACGCGGTCAGCCTCGACGAGGCATCCGTGCTGCGCTCCTTCGGATCGAAGACCTAC 3077 Query 42500 CAGTCGTTCCTAGAGCTGTTCGACGCGGTTCCCTACCGGTACGTCGCGACGGCCACGCCG 42559 ||| |||||| | |||||||||| | | || ||||| | ||| || || || |||||| Sbjct 3076 CAGGAGTTCCTCGGCCTGTTCGACGAGATCCCGTACCGCTTCGTGGCCACCGCGACGCCG 3017 Query 42560 TCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGTTATCTCGGGGTGATGGAC 42616 ||||| |||||| ||||||||||||| |||||||| || | ||||| | |||||| Sbjct 3016 TCACCCAACCGGCACAAGGAGCTGATCCACTACGCCGGGTTCCTCGGCCTCATGGAC 2960 >seq73813 Length=1303 Score = 86.0 bits (94), Expect = 2e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 35060 GTTGCCAAGGACGTGTGCGAGGCCGCGGGGATTTCGAAGTACCGCGACGCGATCGTCCAA 35119 || || ||||| |||||||| | || || | ||||| |||||||| ||| || Sbjct 177 GTCGCGAAGGATGTGTGCGATGTACTCGGCATCGCCAAGTATCGCGACGCCTTCGCGCAG 118 Query 35120 CTGGACGACGACGAAAGGGTGTACCTGTTCGTGGACACCCCTGGCGGACCGCAACGCATG 35179 || |||| ||||||||||| || | | ||||||||||| |||||||| || | ||| Sbjct 117 CTCGACGCCGACGAAAGGGCGTCCGCGCCCGTGGACACCCTTGGCGGACGACAGCTGATG 58 Query 35180 GTCGCGGTCACCGAGGCAGGTGTGTGGTCACTGCTCATGATCAGCCGGTCACCGAAG 35236 | |||| |||| | ||||||| | ||| | | ||||| || || |||||| Sbjct 57 ACGGTCGTCAGCGAGCCCGGTGTGTTCGCGCTGATGCTCATCAGTCGATCGCCGAAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183028569037830