Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_025456.1
Length=46547
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 154 4e-33
seq95291 129 2e-25
>seq80997
Length=4773
Score = 154 bits (170), Expect = 4e-33
Identities = 294/422 (70%), Gaps = 12/422 (3%)
Strand=Plus/Plus
Query 19526 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 19585
||| | || |||||||| |||| |||||||| |||||||||| | | | |
Sbjct 4357 ACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACT 4416
Query 19586 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCAT 19644
|| || |||| || ||||| || || || || || || ||||| || |||||||| ||
Sbjct 4417 GCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTAT 4475
Query 19645 CCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGT 19704
|| || || || || || || |||||||||||||| ||||| || || || | |
Sbjct 4476 TCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTAT 4535
Query 19705 TCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTT 19762
||| | | || || || || | || || || || || |||||||| ||| ||
Sbjct 4536 TCCTACTTCTGCG--GCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTT 4593
Query 19763 GATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGC 19822
||||| ||| | |||||||| || || | |||| | || | |||||| | ||||
Sbjct 4594 GATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGT 4653
Query 19823 AT--CTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTT 19880
| || |||| ||||||| || |||||||||||||| | ||| || || ||| | ||||
Sbjct 4654 GTAGCT-TGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTT 4711
Query 19881 GGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTAC 19939
||||| |||||| || | |||| |||| |||||| || | || ||||| | ||||
Sbjct 4712 GGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTACTGT-TTTCTTGATCTAT 4770
Query 19940 CC 19941
||
Sbjct 4771 CC 4772
>seq95291
Length=6073
Score = 129 bits (142), Expect = 2e-25
Identities = 261/379 (69%), Gaps = 10/379 (3%)
Strand=Plus/Minus
Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591
|| |||||||| |||| ||||||| |||||||||| | | | | || |
Sbjct 6034 AATCGTCTTTACATTGGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCAAAT 5975
Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650
|||| || ||||| || || || || || || ||||| || |||||||| || || ||
Sbjct 5974 -TCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 5916
Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710
| || || || || |||||||||||||| ||||| | || || | |||| |
Sbjct 5915 GCTTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTAC 5856
Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768
| || || || || | || || || || || |||||||| ||| |||||||
Sbjct 5855 TTCTGCG--GCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAG 5798
Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCAT--CT 19826
||| | |||||||| || || | |||| | || | |||||| | |||| | ||
Sbjct 5797 TGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 5738
Query 19827 ATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTT 19886
|||| ||||||| || |||||||||||||| | ||| || || ||| | |||||||||
Sbjct 5737 -TGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTG 5680
Query 19887 GTGTTGCCTACTCTGCTCC 19905
|||||| || || |||||
Sbjct 5679 CTGTTGCATATTCAGCTCC 5661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148432853535030
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |