Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq80997 154 4e-33 seq95291 129 2e-25 >seq80997 Length=4773 Score = 154 bits (170), Expect = 4e-33 Identities = 294/422 (70%), Gaps = 12/422 (3%) Strand=Plus/Plus Query 19526 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 19585 ||| | || |||||||| |||| |||||||| |||||||||| | | | | Sbjct 4357 ACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACT 4416 Query 19586 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCAT 19644 || || |||| || ||||| || || || || || || ||||| || |||||||| || Sbjct 4417 GCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTAT 4475 Query 19645 CCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGT 19704 || || || || || || || |||||||||||||| ||||| || || || | | Sbjct 4476 TCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTAT 4535 Query 19705 TCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTT 19762 ||| | | || || || || | || || || || || |||||||| ||| || Sbjct 4536 TCCTACTTCTGCG--GCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTT 4593 Query 19763 GATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGC 19822 ||||| ||| | |||||||| || || | |||| | || | |||||| | |||| Sbjct 4594 GATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGT 4653 Query 19823 AT--CTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTT 19880 | || |||| ||||||| || |||||||||||||| | ||| || || ||| | |||| Sbjct 4654 GTAGCT-TGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTT 4711 Query 19881 GGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTAC 19939 ||||| |||||| || | |||| |||| |||||| || | || ||||| | |||| Sbjct 4712 GGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTACTGT-TTTCTTGATCTAT 4770 Query 19940 CC 19941 || Sbjct 4771 CC 4772 >seq95291 Length=6073 Score = 129 bits (142), Expect = 2e-25 Identities = 261/379 (69%), Gaps = 10/379 (3%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 || |||||||| |||| ||||||| |||||||||| | | | | || | Sbjct 6034 AATCGTCTTTACATTGGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCAAAT 5975 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || ||||| || || || || || || ||||| || |||||||| || || || Sbjct 5974 -TCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 5916 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 | || || || || |||||||||||||| ||||| | || || | |||| | Sbjct 5915 GCTTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTAC 5856 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | || || || || | || || || || || |||||||| ||| ||||||| Sbjct 5855 TTCTGCG--GCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAG 5798 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCAT--CT 19826 ||| | |||||||| || || | |||| | || | |||||| | |||| | || Sbjct 5797 TGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 5738 Query 19827 ATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTT 19886 |||| ||||||| || |||||||||||||| | ||| || || ||| | ||||||||| Sbjct 5737 -TGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTG 5680 Query 19887 GTGTTGCCTACTCTGCTCC 19905 |||||| || || ||||| Sbjct 5679 CTGTTGCATATTCAGCTCC 5661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148432853535030