Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq80997 159 1e-34 seq95291 138 3e-28 >seq80997 Length=4773 Score = 159 bits (176), Expect = 1e-34 Identities = 293/421 (70%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 28654 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 28713 ||| | || |||||||| |||| |||||||| |||||||||| | | | | Sbjct 4357 ACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACT 4416 Query 28714 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCAT 28772 || || |||| || ||||| || || || || || || ||||| || |||||||| || Sbjct 4417 GCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTAT 4475 Query 28773 CCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGT 28832 || || ||||| ||||| ||| || ||||||||||| ||||| || || || | | Sbjct 4476 TCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTAT 4535 Query 28833 ACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTT 28890 || | | || || || || | || || || || || |||||||| ||| || Sbjct 4536 TCCTACTTCTGCG--GCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTT 4593 Query 28891 GATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGC 28950 ||||| ||| | |||||||| || || | |||| | || | |||||| | |||| Sbjct 4594 GATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGT 4653 Query 28951 GT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGT 29008 || || |||| ||||||| || |||||||||||||| | ||| || || ||| | || | Sbjct 4654 GTAGCT-TGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTT 4711 Query 29009 GGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACC 29068 ||||| ||| ||||| | ||||| || | ||| || || | |||||| | |||| | Sbjct 4712 GGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTACTGTTTTCTTGATCTATC 4771 Query 29069 C 29069 | Sbjct 4772 C 4772 >seq95291 Length=6073 Score = 138 bits (152), Expect = 3e-28 Identities = 263/379 (69%), Gaps = 10/379 (3%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 || |||||||| |||| ||||||| |||||||||| | | | | || | Sbjct 6034 AATCGTCTTTACATTGGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCAAAT 5975 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || ||||| || || || || || || ||||| || |||||||| || || || Sbjct 5974 -TCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 5916 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 | ||| ||||| ||| || ||||||||||| ||||| | || || | | || | Sbjct 5915 GCTTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTAC 5856 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | || || || || | || || || || || |||||||| ||| ||||||| Sbjct 5855 TTCTGCG--GCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAG 5798 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGT--CT 28954 ||| | |||||||| || || | |||| | || | |||||| | |||| || || Sbjct 5797 TGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 5738 Query 28955 ATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTT 29014 |||| ||||||| || |||||||||||||| | ||| || || ||| | || |||||| Sbjct 5737 -TGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTG 5680 Query 29015 GTGTCGCATACTCAGCTCC 29033 ||| ||||| |||||||| Sbjct 5679 CTGTTGCATATTCAGCTCC 5661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146275408546110