Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_025464.1
Length=44147
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 212 2e-50
seq95291 178 4e-40
>seq80997
Length=4773
Score = 212 bits (234), Expect = 2e-50
Identities = 317/442 (72%), Gaps = 10/442 (2%)
Strand=Plus/Plus
Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783
|| ||| | ||| ||||||| || || || |||||||| || || |||||||| ||
Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395
Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842
|||||||| | | | | || ||| | ||| || ||||| || || || ||||| ||
Sbjct 4396 ATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCC 4454
Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902
||| ||||| |||||||| || || ||||||||| | || ||| ||||||||||||||
Sbjct 4455 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 4514
Query 18903 CATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCA 18960
||||| || || || | |||| | | || || || || | || || || ||
Sbjct 4515 TATCATTTCTGGTGCGATTATTCCTACTTCTGCG--GCTATAGGTTTGCATTTTTATCCG 4572
Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTG 19020
|| |||||||| ||| ||||||| ||| | |||||||| || || | |||| |
Sbjct 4573 ATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATT 4632
Query 19021 GTCTTCCACTTCCTCATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCT 19078
|| | |||||| | |||| || || |||| ||||||| || |||||||||||||| |
Sbjct 4633 GTTCTACACTTCTTACTTGGTGTAGCT-TGCT-ACATGGGTCGTGAGTGGGAACTTAGTT 4690
Query 19079 ATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCT 19138
||| || || ||||| ||||||||| |||||| || | ||||| ||||| || ||
Sbjct 4691 TTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTA 4750
Query 19139 CTGCGGTCTTCCTTGTCTATCC 19160
|| | || ||| | |||||||
Sbjct 4751 CTACTGTTTTCTTGATCTATCC 4772
>seq95291
Length=6073
Score = 178 bits (196), Expect = 4e-40
Identities = 288/406 (71%), Gaps = 10/406 (2%)
Strand=Plus/Minus
Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783
|| ||| | ||| |||||| | || || |||||||| || || ||||||| ||
Sbjct 6061 TTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTTGATGTTTTG 6002
Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842
|||||||| | | | | || | | | ||| || ||||| || || || ||||| ||
Sbjct 6001 ATGATTCCTACTTTATTGACTGCAAAT-TCTGTATTTATTATCGCTTTTATCGCTGCCCC 5943
Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902
||| ||||| |||||||| || || |||| |||| | || ||| ||||||||||||||
Sbjct 5942 TCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTATGGAAACAA 5883
Query 18903 CATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCA 18960
||||| | || || | |||| | | || || || || | || || || ||
Sbjct 5882 TATCATTTTTGGTGCGATTATTCCTACTTCTGCG--GCTATAGGTTTGCATTTTTATCCG 5825
Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTG 19020
|| |||||||| ||| ||||||| ||| | |||||||| || || | |||| |
Sbjct 5824 ATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATT 5765
Query 19021 GTCTTCCACTTCCTCATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCT 19078
|| | |||||| | |||| || || |||| ||||||| || |||||||||||||| |
Sbjct 5764 GTTCTACACTTCTTACTTGGTGTAGCT-TGCT-ACATGGGTCGTGAGTGGGAACTTAGTT 5707
Query 19079 ATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCC 19124
||| || || ||||| ||||||||| |||||| || ||||||||
Sbjct 5706 TTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 140773285527030
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |