Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq158136 95.1 1e-14 seq39107 86.0 6e-12 >seq158136 Length=352 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||||| || ||||| | ||||| | ||||| ||| | Sbjct 21 ATGCAAATCTTTGTGAAGACATTGACGGGAAAGACAATCACTCTTGAAGTGGAAAGCTCT 80 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || || ||| || ||||||||||| || || || ||| Sbjct 81 GACACCATTGACAATGTCAAGGCTAAGATTCAGGACAAAGAGGGTATCCCACCAGACCAG 140 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| ||||||| | || ||||| || || |||| ||| | ||||||||| Sbjct 141 CAAAGGCTCATTTTTGCTGGAAAACAGCTTGAGGATGGCCGAACCCTTGCCGATTACAAC 200 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||||| ||||| || ||| | ||||| ||| Sbjct 201 ATTCAGAAAGAGTCTACCCTGCATTTGGTG 230 >seq39107 Length=55737 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| || || || || | ||||| | ||||| ||| | Sbjct 40934 ATGCAGATCTTTGTGAAAACTTTGACTGGCAAGACCATCACCCTTGAAGTAGAATCGTCT 40993 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || || || || ||||||||||| || || ||||| Sbjct 40994 GACACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAA 41053 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| | |||| | || ||||||||||| |||| |||| | |||||||||| Sbjct 41054 CAAAGGTTAATTTTTGCTGGTAAACAACTCGAGGATGGGAGAACCCTTGCCGATTACAAT 41113 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| || || ||||| | || || ||| | | ||||| || || Sbjct 41114 ATTCAGAAGGAGTCCACGCTCCACTTGGTGCTTCGTTTGAGGGGTGG 41160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443847940951200