Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq222699 329 5e-84 seq205188 324 2e-82 >seq222699 Length=2956 Score = 329 bits (364), Expect = 5e-84 Identities = 413/562 (73%), Gaps = 10/562 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| || ||| | ||||| |||| || | ||||||| |||| |||| | Sbjct 59 GAGCCACTCCTGGCCCCGAACCCCGACCGGTTCTGCATGTTCCCAATCCAATACCCCCAA 118 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || |||||||||||| | |||| |||| ||||| || ||||||||||| ||||| || || Sbjct 119 ATTTGGGAAATGTACAAGAAAG-CCGAAGCCTCTTTCTGGACCGCCGAAGAGGTTGATCT 177 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 | ||| |||||||| || || | ||||| ||||||| | ||||||| || Sbjct 178 TTCCCAAGACCTCCGCCACTGGGACTCCCTCACCGACGGCGAGCGCTACTTCATCACCCA 237 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 |||||||||||| ||| |||||| ||| |||||||| ||| ||||| |||| ||||| Sbjct 238 CGTCCTCGCCTTCTTT-GCCGCCTCCGACGGCATCGTTCTCGAAAACCTCGCCGCCCGCT 296 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | ||||| || ||||| | ||||| ||| || ||||| |||||||||||||||| Sbjct 297 TCATGAAGGAAATCCAAGCCGCCGAGGCCCGTGCTTTCTACGGCTTCCAGATCGCCATCG 356 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||||||||| || | ||| ||||| | || |||||| |||| ||| | || Sbjct 357 AGAACATCCACTCCGAGATGTACAGTCTCCTCTTGGAAACCTACATCAAAGACTCCACCG 416 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 | ||| | ||||| || |||||| | || || | || | || || |||||| | | Sbjct 417 AAAAGAATCACCTGTTCCGCGCCGTAGATACCATCCCCTGTGTCGCCAAGAAGGCCCAAT 476 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGAC-ACTTTGCCGAGCGGCTCGTCGGCT 1456194 |||| || |||||| || | | |||| |||||||||||| ||||||| || Sbjct 477 GGGCCTTGCGCTGGATC------GATGCCACCGACTCCTTTGCCGAGCGCCTCGTCGCCT 530 Query 1456195 TTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253 | ||| |||||||||| ||||| ||||| ||||| |||||| | || |||||||| |||| Sbjct 531 TCGCCTGCGTCGAGGGAATCTTCTTCTCCGGCAGCTTCTGCTCGATATTTTGGCTAAAGA 590 Query 1456254 AGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| | |||||||| || Sbjct 591 AGCGCGGCTTGATGCCCGGCCT 612 >seq205188 Length=846 Score = 324 bits (358), Expect = 2e-82 Identities = 412/560 (74%), Gaps = 13/560 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| |||| | || |||||||||||| | |||| | || ||||| || Sbjct 559 TGTTCCCTATCCAATACCCCCAAATCTGGGAAATGTACAAGAAAG-CAGAAGCCTCGTTC 501 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 ||||| || ||||||||||| ||| |||| ||| ||| | || | |||| Sbjct 500 TGGACGGCGGAGGAGGTCGATCTCTCTCAGGACATCAGCCATTGGAACACTCTCACCGAC 441 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 | ||||||||||||||||| |||||||| ||||| || ||||||| ||| |||||||| Sbjct 440 GGCGAGCGCCATTTCATCACCCACGTCCTTGCCTTCTT-CGCCGCCTCCGACGGCATCGT 382 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTT 1455992 ||| ||||| |||||||| |||||||| |||||||| | | ||||| || || Sbjct 381 ACTCGAAAACCTCGCCGGCCGTTTTATGAAGGAGGTCCAGGTCTCCGAGGCCCGCGCCTT 322 Query 1455993 TTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGA 1456052 |||||| ||||||||||||||||| ||||| ||||| || | ||| ||||| |||| Sbjct 321 TTACGGCTTCCAGATCGCCATCGAGAACATTCACTCCGAGATGTACAGCCTCCTCCTCGA 262 Query 1456053 CACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112 |||||| | || ||| | || ||||| || ||||||| |||||| ||||| | || Sbjct 261 AACCTACATAAAAGACTCCGTAGAGAAAAGCCGTCTCTTTCACGCCATTGACACCATTCC 202 Query 1456113 GTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCT-CGAC- 1456170 | || | || |||||| ||||||| | |||||| || | | |||| Sbjct 201 CTGTGTCACCAAGAAGGCCAACTGGGCCCTCCGCTGGATCGAC-------TCTTCCGACT 149 Query 1456171 ACTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTT 1456229 ||| |||||||| |||||| |||||| |||| ||||| ||||| ||||| || || | Sbjct 148 CCTTCGCCGAGCGCATCGTCGCATTTGCCTGCGTTGAGGGAATCTTCTTCTCCGGAAGCT 89 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAAC 1456289 | ||| ||||||| ||||||||||| || ||||||||||| || | || ||| |||| Sbjct 88 TTTGCTCCATCTTCTGGCTCAAGAAACGGGGCCTCATGCCAGGAC-TCACCTTCTCCAAC 30 Query 1456290 GAATTTATCAGTCGCGACGA 1456309 ||| | ||| |||||||| Sbjct 29 GAACTCATCTCCCGCGACGA 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7156202612473670