Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_026604.1 Length=53636 Score E Sequences producing significant alignments: (Bits) Value seq24349 495 1e-135 >seq24349 Length=3626 Score = 495 bits (548), Expect = 1e-135 Identities = 591/795 (74%), Gaps = 13/795 (2%) Strand=Plus/Minus Query 40641 GTGATGCTCGGGCAGGGCATGAACCTGCAGCAGGCCCACACCTGTGTGTACATGGGCATC 40700 ||||||||||| ||||||||||||||||||||||| ||||| || | | | ||| || Sbjct 2299 GTGATGCTCGGCCAGGGCATGAACCTGCAGCAGGCGCACACGGCCGTCTTCGTCGGCGTC 2240 Query 40701 ACGCACAAGTTCAACGATCTAATCCAGAGCTTGCACCGGATTCAGCGGTTCGGCCAAACC 40760 || |||| |||||||| |||||| | ||||||| || ||||| ||||| || | Sbjct 2239 ACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCATCCAGCGCTTCGGACAG-CA 2181 Query 40761 CATC-CCTGCACAGCCCATTTGATCCACTCCGAGACCGAGCGGGAAGTGGTGCGGGTCAT 40819 | | ||||| | || ||||| || |||| |||||| || | | || | || Sbjct 2180 GAGCACCTGCGACGTGCACCTGATCTACGCCGAAACCGAGTCCGA---GATCCGCGACAC 2124 Query 40820 CCGC---GAGAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCGACATCATTCA 40876 || | | ||| |||| | | ||| || | || || |||| |||| | || | Sbjct 2123 CCTCCTGGCGAAGTGGGAAGAGCACGACCAGCTCACCGACACCATGAGCGACGTGATCCG 2064 Query 40877 TGAGTACGGACTTGACCCCGAGGCAATTTCGGAAGCGCTGCAACGCTCCATCGGATGTGA 40936 |||| |||||| |||||| || || || | || || ||| |||| || || Sbjct 2063 CGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTCACCCGCGCCATGGGCGTCGA 2004 Query 40937 GCGCATCGAAGCATCCGGTGAGGGATGGGTGTTCGTCAACAACGACTGCGTTCACGAAAC 40996 |||| ||||||||||||| || ||| | ||| |||||||||||| ||| || Sbjct 2003 GCGCGTCGAAGCATCCGGGCCCGGCTGGACGCTCGCGCTCAACGACTGCGTGATCGAGAC 1944 Query 40997 C---GAGAGAATGGCAGACGATTCGGTGGATCTGATTGTCACTAGCATTCCGTTCTCCAA 41053 | || ||||| || || || || ||||| ||||| || |||||||| || Sbjct 1943 CCGCGACCACATGGCCACGGACTCCGTCGACCTGATCGTCACGTCGATCCCGTTCTCGAA 1884 Query 41054 CCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACACCGACGACAACGCGCATTT 41113 ||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| || Sbjct 1883 CCACTACGAGTACACCCCCAGCTACAACGACTTCGGCCACACCGACGACAACCTGCACTT 1824 Query 41114 CTGGGCGCAGATGGACTACCTCACACCGCAGCTGCTGCGCATCCTCGCG-CCGGGCCGTA 41172 |||| |||||||||||||||||| ||| |||| ||||| | || ||| || || || | Sbjct 1823 CTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGCGGGTGCT-GCGTCCAGGACGGA 1765 Query 41173 TCTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGGAAACGTCACCGGCGCCGGCGTGC 41232 |||| ||||||||||| ||||| || ||| |||||| ||||||||||| |||||| | | Sbjct 1764 TCTATGCCTGCCACGTGAAGGATCGAATCCAGTTCGGCAACGTCACCGGAGCCGGCATCC 1705 Query 41233 CCACAGTGTCCCCGTTCCACGCCGAGGCGATCTTCCACGGCCGCAAACACGGCTTCGACT 41292 |||| || || |||||||||||||| ||| || ||||||| ||| || |||||||||| Sbjct 1704 CCACCGTCTCACCGTTCCACGCCGAAGCGCTCGCGCACGGCCTCAAGCATGGCTTCGACT 1645 Query 41293 ACCTCGGCATGATCACCGTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGC 41352 || | |||||||||||||| |||||| || ||||| || ||||||||||| ||||| | Sbjct 1644 ACATGGGCATGATCACCGTCACCACCGACGTCGTGCGCGAGAACAACCAGACCTACCGCC 1585 Query 41353 TGGGCTGGTCGGAGCAGTGCAAAGACGCCACCAAGATGGGTGTCGGCTCCCCGGAATACA 41412 | |||| ||||| | |||| |||| ||| |||||||| |||||||| || || |||| Sbjct 1584 TCGGCTACGCGGAGATGCGCAAGGACGGCACGAAGATGGGCGTCGGCTCACCCGAGTACA 1525 Query 41413 TTCTGCTGTTCCACA 41427 | ||||| ||||||| Sbjct 1524 TCCTGCTCTTCCACA 1510 Score = 147 bits (162), Expect = 7e-31 Identities = 177/237 (75%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 39872 CGGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC-ACTG- 39929 ||| ||||| |||| ||||| ||||| || |||||||| | | ||| | || | Sbjct 3194 CGGCATCTACGTCACGAACTACGAGAGCGTGCGCGACGGCCGCCTCG--CCGTCGACGGC 3137 Query 39930 TTCACGGCCGTCTCACTCGATGAGGCCAGCGTGTTGCGGTCTTTCGGGTCCAAGACCTAC 39989 ||| || ||| ||||| ||||| |||| |||| || ||||| || ||||||||| Sbjct 3136 TTCGACGCGGTCAGCCTCGACGAGGCATCCGTGCTGCGCTCCTTCGGATCGAAGACCTAC 3077 Query 39990 CAGTCGTTCCTAGAGCTGTTCGACGCGGTTCCCTACCGGTACGTCGCGACGGCCACGCCG 40049 ||| |||||| | |||||||||| | | || ||||| | ||| || || || |||||| Sbjct 3076 CAGGAGTTCCTCGGCCTGTTCGACGAGATCCCGTACCGCTTCGTGGCCACCGCGACGCCG 3017 Query 40050 TCACCGAACCGGTACAAGGAGCTGATTCACTACGCGGGTTATCTCGGGGTGATGGAC 40106 ||||| |||||| ||||||||||||| |||||||| || | ||||| | |||||| Sbjct 3016 TCACCCAACCGGCACAAGGAGCTGATCCACTACGCCGGGTTCCTCGGCCTCATGGAC 2960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171057302538660