Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq80997 237 2e-57 seq95291 210 3e-49 seq13836 102 1e-16 seq78999 96.9 5e-15 >seq80997 Length=4773 Score = 237 bits (262), Expect = 2e-57 Identities = 305/418 (73%), Gaps = 2/418 (0%) Strand=Plus/Plus Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548 ||| | |||||||||||| | || ||||| |||||| | ||||||||||| || || | Sbjct 4357 ACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACT 4416 Query 174549 GCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607 |||||| | ||| || ||||||||||| | | ||| || ||||| || || || || || Sbjct 4417 GCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTAT 4475 Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGT 174667 ||||| || || |||| || || | ||||||||||| ||||| |||||||| || | Sbjct 4476 TCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTAT 4535 Query 174668 TCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGA 174727 ||||| ||| || || ||| | || || || || |||||||||||||| | | || Sbjct 4536 TCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGA 4595 Query 174728 CGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTAT 174787 || ||| | |||||||| ||||||| ||||| |||| | |||||| | ||||| | Sbjct 4596 TGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT 4655 Query 174788 CTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGAT 174847 ||| ||||| |||||||||||||| || |||| | |||||| | |||||||| Sbjct 4656 AGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGAT 4715 Query 174848 CTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCT 174905 ||| ||||| | || | |||| ||| ||| | | || ||| | |||||||| Sbjct 4716 TGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTACTGTTTTCTTGATCTATCCT 4773 >seq95291 Length=6073 Score = 210 bits (232), Expect = 3e-49 Identities = 297/412 (72%), Gaps = 4/412 (1%) Strand=Plus/Minus Query 174459 TGGGATCAGTTTTGTTCCTGGGTCAC-ATCAACCAACAATCGTCTTTACGTCGGTTGGTT 174517 |||| ||| || ||| ||| | || | || | || |||||||||||| | || ||||| Sbjct 6070 TGGGGTCACTTCTGTAATTGGATAACCAACATCGAA-AATCGTCTTTACATTGGATGGTT 6012 Query 174518 CGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGT-TTCATTATCGCTTTCG 174576 | |||| | ||||||||||| || || | |||| | | ||| || ||||||||||| Sbjct 6011 TGATGTTTTGATGATTCCTACTTTATTGACTGCAAAT-TCTGTATTTATTATCGCTTTTA 5953 Query 174577 TGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGT 174636 | | ||| || ||||| || || || || || ||||| | || |||| || || | | Sbjct 5952 TCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTT 5893 Query 174637 ATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACT 174696 |||||||||| ||||| | |||||| || |||||| ||| || || ||| | || | Sbjct 5892 ATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATT 5833 Query 174697 TCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCC 174756 | || || |||||||||||||| | | || || ||| | |||||||| ||||||| Sbjct 5832 TTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATG 5773 Query 174757 AACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAAC 174816 ||||| |||| | |||||| | ||||| | ||| ||||| ||||||||||||| Sbjct 5772 AACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAAC 5713 Query 174817 TCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACC 174868 | || |||| | |||||| | |||||||| ||| ||||| || || || Sbjct 5712 TTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661 >seq13836 Length=10167 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 176130 GGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTT 176189 || || || ||| | |||||||||||||||||||| |||| | || || |||||| | Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529 Query 176190 CGTCAGTTTGAACTGGCAAGACTCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGT 176249 ||||| |||||||| || || || | || || || || || | |||||| Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAACCGCATTCTCA 4589 Query 176250 GGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGG 176309 ||||| || ||||| ||||| ||| || ||| | || ||||| ||||| ||| ||| Sbjct 4590 GGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTGG 4649 Query 176310 TTCTTTGCCCC 176320 |||||||| || Sbjct 4650 TTCTTTGCTCC 4660 >seq78999 Length=659 Score = 96.9 bits (106), Expect = 5e-15 Identities = 201/294 (68%), Gaps = 4/294 (1%) Strand=Plus/Minus Query 176556 AACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTC 176615 || ||||| ||||| ||||||| |||||| || ||||| ||||| | | ||| Sbjct 321 AATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACG-TTC 263 Query 176616 TTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTT 176675 | |||||| ||||| || || | ||| | || || | | |||| | || | | Sbjct 262 TGTATGTTATTTGTACCAGTAACTGGTTTACGGATCATTACTTTTGGGGTAGTTAGTTTG 203 Query 176676 GCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCT 176735 || || || || ||||||||||| ||||| |||| ||| | | ||||||||||||| Sbjct 202 GCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATCCT 143 Query 176736 GAGTTTGAAACTTTCTACACAAAGAACATCCTTCTT-AACGAAGGACTAAGAGCATGGAT 176794 | ||||| ||||||||||| || | || ||||| |||||||| | | | ||||| Sbjct 142 TA-TTTGAGACTTTCTACACCAAAAGTAT-TTTCTTAAACGAAGGTATTCGTGGGTGGAT 85 Query 176795 GGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACC 176848 || | | ||| | | ||||| || ||||| | |||| |||||||| Sbjct 84 GGGAGTTCAAGATTAGCTTCATGAAAACCTTATATTCGCTAAAGAGGTTCTACC 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 727885477775800