Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq80997 210 3e-49 seq95291 185 1e-41 seq13836 109 7e-19 seq76780 86.0 8e-12 >seq80997 Length=4773 Score = 210 bits (232), Expect = 3e-49 Identities = 315/441 (71%), Gaps = 6/441 (1%) Strand=Plus/Plus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 ||||| | ||| |||| ||| | || || || || | || ||||| || || || Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 |||||||| ||| | ||| | |||||| ||||| || || |||| || ||||||| || Sbjct 4396 ATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCC 4454 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || || || || || ||||| || || |||| || || | ||||| ||||| Sbjct 4455 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 4514 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 ||||| |||||||| || |||| |||| || || ||| | || || ||||| || Sbjct 4515 TATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGAT 4574 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 ||||||||| || || ||||||||||| | || ||||| ||||||| |||| | || Sbjct 4575 CTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGT 4634 Query 178148 ATTTCACTTCCTCATTG--GTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATAC 178205 | |||||| | ||| ||| || ||| |||||||| ||||||||||||||| | Sbjct 4635 TCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGTTTT 4692 Query 178206 CGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCG 178265 ||| | |||||||| || ||||| ||| ||||| | |||| || | ||| || | Sbjct 4693 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACT 4752 Query 178266 GCAGTATTCCTGGTCTATCCT 178286 | || ||| || |||||||| Sbjct 4753 ACTGTTTTCTTGATCTATCCT 4773 >seq95291 Length=6073 Score = 185 bits (204), Expect = 1e-41 Identities = 262/362 (72%), Gaps = 6/362 (2%) Strand=Plus/Minus Query 177891 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGT 177949 || ||||| | || |||||||||| ||| | ||| | |||| | ||||| || || | Sbjct 6019 GGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCAAAT-TCTGTATTTATTAT 5961 Query 177950 CGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 178009 ||| || ||||||| || || || || || || || || ||||| | || |||| || Sbjct 5960 CGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATC 5901 Query 178010 ACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGG 178069 || | ||||| ||||| ||||| | |||||| || |||| |||| || || || Sbjct 5900 TCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGG 5841 Query 178070 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 178129 | | || || ||||| ||||||||||| || || ||||||||||| | || ||||| || Sbjct 5840 TTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGG 5781 Query 178130 TCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTAT--CTATGCATACATGGGACGT 178187 ||||| |||| | || | |||||| | ||||| | || ||| |||||||| ||| Sbjct 5780 TCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGT 5723 Query 178188 GAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCT 178247 |||||||||||| | ||| | |||||||| || ||||| ||| ||||| || ||| Sbjct 5722 GAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 5663 Query 178248 CC 178249 || Sbjct 5662 CC 5661 >seq13836 Length=10167 Score = 109 bits (120), Expect = 7e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 179502 GGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTT 179561 || || || |||| ||| || |||||||||||||| |||| | || || |||||| | Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529 Query 179562 AGGCAATTTGAACTTGCTCG-CCTGATTGGTATCAGACCTTACAATGCGATTGCTTTTTC 179620 | ||||||||||||||||| ||| || | ||||||| ||||| | || || || Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTG-TTCAATTGCGACCTTATAATGCAACCGCATTCTC 4588 Query 179621 TGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTG 179680 ||||| |||||||| || || ||| ||||| || ||||| |||| ||||| ||| Sbjct 4589 AGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTG 4648 Query 179681 GTTTTTCGCGCC 179692 ||| || || || Sbjct 4649 GTTCTTTGCTCC 4660 >seq76780 Length=5561 Score = 86.0 bits (94), Expect = 8e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 179370 GCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGA 179428 || ||||| ||| | || || ||| ||||| | || || || || || || || ||| | Sbjct 411 GCAAGTTCTTATTTAGAAGGCTGC-AACTTCTTAACCGCTGCAGTTTCCACTCCCGCTAA 353 Query 179429 TGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCG 179488 | | | | || ||| | | |||| ||||||||||| | ||||| ||||| | Sbjct 352 TAGTTTAGCACACTCTTTGTTGATACTGTGGGGTCCTGAAGCACAGGGAAATTTTACCTG 293 Query 179489 GTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCAT 179548 ||||| || | || || || |||| ||| || ||| |||||||||| |||| | || Sbjct 292 TTGGTGTCAGTTAGGCGGTCTGTGGACTTTTGTTGCTTTCCACGGTGCTTTCGGATTAAT 233 Query 179549 TGGTTTCATGCTTAGGCAATTTGAACTTGCT 179579 ||||||||| | | ||||||||||| || Sbjct 232 AGGTTTCATGTTACGTTAATTTGAACTTTCT 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 604312507990800