Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq80997 179 4e-40 seq95291 154 2e-32 >seq80997 Length=4773 Score = 179 bits (198), Expect = 4e-40 Identities = 308/441 (70%), Gaps = 6/441 (1%) Strand=Plus/Plus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 ||||| | ||| |||| ||| | || || || || | || ||||| || || || Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 158497 |||||||| ||| | ||| | ||||| ||||| || || |||| || ||||||| || Sbjct 4396 ATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCC 4454 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 || || || || || || || ||||| || || |||| || || | ||||| ||||| Sbjct 4455 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 4514 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 ||||| |||||||| || | || |||| || || ||| | || || ||||| || Sbjct 4515 TATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGAT 4574 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677 ||||||||| || || ||||||||||| | || ||||| ||||||| |||| | || Sbjct 4575 CTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGT 4634 Query 158678 CTTTCACTTCCTTATCG--GCATCTATGCATATATGGGACGTGAATGGGAACTTTCATAC 158735 | |||||| | | | | | || ||| || ||||| ||||| ||||||||| | Sbjct 4635 TCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGTTTT 4692 Query 158736 CGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCT 158795 || | |||||||| || ||||| ||| ||||||| || | || | || || || Sbjct 4693 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACT 4752 Query 158796 GCTGTATTCCTCGTCTATCCT 158816 |||| ||| | |||||||| Sbjct 4753 ACTGTTTTCTTGATCTATCCT 4773 >seq95291 Length=6073 Score = 154 bits (170), Expect = 2e-32 Identities = 255/362 (70%), Gaps = 6/362 (2%) Strand=Plus/Minus Query 158421 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGT 158479 || ||||| | || |||||||||| ||| | ||| | |||| ||||| || || | Sbjct 6019 GGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCAAAT-TCTGTATTTATTAT 5961 Query 158480 CGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 158539 ||| || ||||||| || || || || || || || || ||||| | || |||| || Sbjct 5960 CGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATC 5901 Query 158540 ACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGG 158599 || | ||||| ||||| ||||| | |||||| || | || |||| || || || Sbjct 5900 TCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGG 5841 Query 158600 TCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGG 158659 | | || || ||||| ||||||||||| || || ||||||||||| | || ||||| || Sbjct 5840 TTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGG 5781 Query 158660 TCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCG--GCATCTATGCATATATGGGACGT 158717 ||||| |||| | || | |||||| | | | | | || ||| || ||||| ||| Sbjct 5780 TCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGT 5723 Query 158718 GAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCA 158777 || ||||||||| | || | |||||||| || ||||| ||| |||||||| || Sbjct 5722 GAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 5663 Query 158778 CC 158779 || Sbjct 5662 CC 5661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550926432212800