Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq80997 226 3e-54 seq95291 206 3e-48 seq13836 138 1e-27 seq152218 102 1e-16 seq32149 102 1e-16 seq78999 95.1 1e-14 >seq80997 Length=4773 Score = 226 bits (250), Expect = 3e-54 Identities = 315/439 (72%), Gaps = 2/439 (0%) Strand=Plus/Plus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 ||||| | ||| |||| |||| | |||||| | || |||| ||||| ||||| || Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||||||||| || | |||||||| ||||| || || | ||||| | || || || Sbjct 4396 ATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCC 4454 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || ||||| || || |||| || || | ||||||||||| Sbjct 4455 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 4514 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 ||||| |||||||| || | || | ||| || || ||| | || || || || || Sbjct 4515 TATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGAT 4574 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 |||||||||||| || | ||||||||| | || ||||| ||||||| |||| | || Sbjct 4575 CTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGT 4634 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | |||||| | | || | | ||| ||||| ||||||||||||||| || || Sbjct 4635 TCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCG 4694 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 ||| ||||||||||| ||||| ||||||||| | || | || | || || | | | Sbjct 4695 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTAC 4754 Query 179280 AGTATTCCTCGTCTATCCT 179298 || ||| | |||||||| Sbjct 4755 TGTTTTCTTGATCTATCCT 4773 >seq95291 Length=6073 Score = 206 bits (228), Expect = 3e-48 Identities = 294/411 (72%), Gaps = 2/411 (0%) Strand=Plus/Minus Query 178852 TGGGAACAGTTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTC 178911 |||| || ||||| | ||| |||| || | | |||||| | || |||| ||||| Sbjct 6070 TGGGGTCACTTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTT 6011 Query 178912 GGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGT 178970 | ||| ||||||||||||| || | |||||| | ||||| || || | ||||| | Sbjct 6010 GATGTTTTGATGATTCCTACTTTATTGACTGCAAAT-TCTGTATTTATTATCGCTTTTAT 5952 Query 178971 AGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179030 || || ||||| || |||||||| || || ||||| | || |||| || || | || Sbjct 5951 CGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTA 5892 Query 179031 TGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTT 179090 ||||||||| ||||| | |||||| || | || | ||| || || ||| | || || Sbjct 5891 TGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTT 5832 Query 179091 CTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 179150 || || |||||||||||||| || | ||||||||| | || ||||| ||||||| | Sbjct 5831 TTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGA 5772 Query 179151 ACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACT 179210 ||| | || | |||||| | | || | | ||| ||||| |||||||||||||| Sbjct 5771 ACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACT 5712 Query 179211 TTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACC 179261 | || ||||| ||||||||||| ||||| ||||||||| || || || Sbjct 5711 TAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661 >seq13836 Length=10167 Score = 138 bits (152), Expect = 1e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 180300 GGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTA 180359 || || || |||| ||| || |||||||||||||| |||| |||| || || ||| || Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529 Query 180360 CGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATTGCATTCTCT 180419 || || |||||||| || || | || | || ||||| ||||| | |||||||| Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAACCGCATTCTCA 4589 Query 180420 GGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGG 180479 ||||| || ||||| ||||| ||||| || || || |||||||||||||| ||||| Sbjct 4590 GGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTGG 4649 Query 180480 TTCTTTGCTCC 180490 ||||||||||| Sbjct 4650 TTCTTTGCTCC 4660 >seq152218 Length=324 Score = 102 bits (112), Expect = 1e-16 Identities = 135/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 177390 TACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTACTCATGCCGCGCTGGT 177449 ||||| || || || || ||||| ||| ||||| || ||||||||| | |||||| Sbjct 277 TACATTCTTGATGCTGCAGAAGATCAAGGGCTTGATCTTCCCTACTCATGCAGGGCTGGT 218 Query 177450 GCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGATCAAAGCGATCAATCG 177509 ||||| || |||||| |||| ||| ||| |||||| | || || || || |||| | Sbjct 217 GCTTGCTCTTCCTGTACTGGAAAAGTTGTGAGTGGCACAGTGGACCAGTCAGA-CAATAG 159 Query 177510 -TTCTTGGATGACGATCAAATGGAGTC-AGGATTTATTCTGACCTGTGTGTCATATCCCA 177567 ||| | |||||||| ||||| | ||| ||||||| |||| ||||| || | || |||| Sbjct 158 CTTCCTTGATGACGACCAAATCG-GTCTAGGATTTGTTCTCACCTGCGTTGCTTACCCCA 100 Query 177568 CC 177569 || Sbjct 99 CC 98 >seq32149 Length=26709 Score = 102 bits (112), Expect = 1e-16 Identities = 135/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 177390 TACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTACTCATGCCGCGCTGGT 177449 ||||| || || || || ||||| ||| ||||| || ||||||||| | |||||| Sbjct 21038 TACATTCTTGATGCTGCAGAAGATCAAGGGCTTGATCTTCCCTACTCATGCAGGGCTGGT 20979 Query 177450 GCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGATCAAAGCGATCAATCG 177509 ||||| || |||||| |||| ||| ||| |||||| | || || || || |||| | Sbjct 20978 GCTTGCTCTTCCTGTACTGGAAAAGTTGTGAGTGGCACAGTGGACCAGTCAGA-CAATAG 20920 Query 177510 -TTCTTGGATGACGATCAAATGGAGTC-AGGATTTATTCTGACCTGTGTGTCATATCCCA 177567 ||| | |||||||| ||||| | ||| ||||||| |||| ||||| || | || |||| Sbjct 20919 CTTCCTTGATGACGACCAAATCG-GTCTAGGATTTGTTCTCACCTGCGTTGCTTACCCCA 20861 Query 177568 CC 177569 || Sbjct 20860 CC 20859 >seq78999 Length=659 Score = 95.1 bits (104), Expect = 1e-14 Identities = 201/295 (68%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 180726 AACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTT 180785 || ||||| ||||| | ||||| |||| || | || || | ||| | | || | Sbjct 321 AATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACGTTCT 262 Query 180786 TTCATGTTGTTTGTGCCTGTTATGGGTCTATGGA-CATCCTCTATTGGCATTATTGGTCT 180844 | ||||| ||||| || || | ||| || ||| ||| || |||| | || || | Sbjct 261 GT-ATGTTATTTGTACCAGTAACTGGTTTACGGATCATTA-CTTTTGGGGTAGTTAGTTT 204 Query 180845 TGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCC 180904 || || ||||| |||||||| || || || | |||| || | | |||||||||||| Sbjct 203 GGCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATCC 144 Query 180905 TGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGGTT 180964 | | || ||||| ||||||||||| | || | || || ||||| | |||| ||| | Sbjct 143 TTATTT-GAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTGGGTGGAT 85 Query 180965 GGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCA 181019 || | | ||| | | || |||||| | || ||| || |||| ||||||||| Sbjct 84 GGGAGTTCAAGATTAGCTTCATGAAAACCTTATATTCGCTAAAGAGGTTCTACCA 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608620410100800