Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_027132.1
Length=190768
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 226 3e-54
seq95291 206 3e-48
seq13836 138 1e-27
seq152218 102 1e-16
seq32149 102 1e-16
seq78999 95.1 1e-14
>seq80997
Length=4773
Score = 226 bits (250), Expect = 3e-54
Identities = 315/439 (72%), Gaps = 2/439 (0%)
Strand=Plus/Plus
Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920
||||| | ||| |||| |||| | |||||| | || |||| ||||| ||||| ||
Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395
Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979
||||||||||| || | |||||||| ||||| || || | ||||| | || || ||
Sbjct 4396 ATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCC 4454
Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039
||| || |||||||| || || ||||| || || |||| || || | |||||||||||
Sbjct 4455 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 4514
Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099
||||| |||||||| || | || | ||| || || ||| | || || || || ||
Sbjct 4515 TATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGAT 4574
Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159
|||||||||||| || | ||||||||| | || ||||| ||||||| |||| | ||
Sbjct 4575 CTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGT 4634
Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219
| |||||| | | || | | ||| ||||| ||||||||||||||| || ||
Sbjct 4635 TCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCG 4694
Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279
||| ||||||||||| ||||| ||||||||| | || | || | || || | | |
Sbjct 4695 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTAC 4754
Query 179280 AGTATTCCTCGTCTATCCT 179298
|| ||| | ||||||||
Sbjct 4755 TGTTTTCTTGATCTATCCT 4773
>seq95291
Length=6073
Score = 206 bits (228), Expect = 3e-48
Identities = 294/411 (72%), Gaps = 2/411 (0%)
Strand=Plus/Minus
Query 178852 TGGGAACAGTTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTC 178911
|||| || ||||| | ||| |||| || | | |||||| | || |||| |||||
Sbjct 6070 TGGGGTCACTTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTT 6011
Query 178912 GGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGT 178970
| ||| ||||||||||||| || | |||||| | ||||| || || | ||||| |
Sbjct 6010 GATGTTTTGATGATTCCTACTTTATTGACTGCAAAT-TCTGTATTTATTATCGCTTTTAT 5952
Query 178971 AGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179030
|| || ||||| || |||||||| || || ||||| | || |||| || || | ||
Sbjct 5951 CGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTA 5892
Query 179031 TGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTT 179090
||||||||| ||||| | |||||| || | || | ||| || || ||| | || ||
Sbjct 5891 TGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTT 5832
Query 179091 CTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 179150
|| || |||||||||||||| || | ||||||||| | || ||||| ||||||| |
Sbjct 5831 TTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGA 5772
Query 179151 ACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACT 179210
||| | || | |||||| | | || | | ||| ||||| ||||||||||||||
Sbjct 5771 ACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACT 5712
Query 179211 TTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACC 179261
| || ||||| ||||||||||| ||||| ||||||||| || || ||
Sbjct 5711 TAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661
>seq13836
Length=10167
Score = 138 bits (152), Expect = 1e-27
Identities = 145/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 180300 GGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTA 180359
|| || || |||| ||| || |||||||||||||| |||| |||| || || ||| ||
Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529
Query 180360 CGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATTGCATTCTCT 180419
|| || |||||||| || || | || | || ||||| ||||| | ||||||||
Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAACCGCATTCTCA 4589
Query 180420 GGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGG 180479
||||| || ||||| ||||| ||||| || || || |||||||||||||| |||||
Sbjct 4590 GGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTGG 4649
Query 180480 TTCTTTGCTCC 180490
|||||||||||
Sbjct 4650 TTCTTTGCTCC 4660
>seq152218
Length=324
Score = 102 bits (112), Expect = 1e-16
Identities = 135/182 (74%), Gaps = 4/182 (2%)
Strand=Plus/Minus
Query 177390 TACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTACTCATGCCGCGCTGGT 177449
||||| || || || || ||||| ||| ||||| || ||||||||| | ||||||
Sbjct 277 TACATTCTTGATGCTGCAGAAGATCAAGGGCTTGATCTTCCCTACTCATGCAGGGCTGGT 218
Query 177450 GCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGATCAAAGCGATCAATCG 177509
||||| || |||||| |||| ||| ||| |||||| | || || || || |||| |
Sbjct 217 GCTTGCTCTTCCTGTACTGGAAAAGTTGTGAGTGGCACAGTGGACCAGTCAGA-CAATAG 159
Query 177510 -TTCTTGGATGACGATCAAATGGAGTC-AGGATTTATTCTGACCTGTGTGTCATATCCCA 177567
||| | |||||||| ||||| | ||| ||||||| |||| ||||| || | || ||||
Sbjct 158 CTTCCTTGATGACGACCAAATCG-GTCTAGGATTTGTTCTCACCTGCGTTGCTTACCCCA 100
Query 177568 CC 177569
||
Sbjct 99 CC 98
>seq32149
Length=26709
Score = 102 bits (112), Expect = 1e-16
Identities = 135/182 (74%), Gaps = 4/182 (2%)
Strand=Plus/Minus
Query 177390 TACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTACTCATGCCGCGCTGGT 177449
||||| || || || || ||||| ||| ||||| || ||||||||| | ||||||
Sbjct 21038 TACATTCTTGATGCTGCAGAAGATCAAGGGCTTGATCTTCCCTACTCATGCAGGGCTGGT 20979
Query 177450 GCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGATCAAAGCGATCAATCG 177509
||||| || |||||| |||| ||| ||| |||||| | || || || || |||| |
Sbjct 20978 GCTTGCTCTTCCTGTACTGGAAAAGTTGTGAGTGGCACAGTGGACCAGTCAGA-CAATAG 20920
Query 177510 -TTCTTGGATGACGATCAAATGGAGTC-AGGATTTATTCTGACCTGTGTGTCATATCCCA 177567
||| | |||||||| ||||| | ||| ||||||| |||| ||||| || | || ||||
Sbjct 20919 CTTCCTTGATGACGACCAAATCG-GTCTAGGATTTGTTCTCACCTGCGTTGCTTACCCCA 20861
Query 177568 CC 177569
||
Sbjct 20860 CC 20859
>seq78999
Length=659
Score = 95.1 bits (104), Expect = 1e-14
Identities = 201/295 (68%), Gaps = 4/295 (1%)
Strand=Plus/Minus
Query 180726 AACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTT 180785
|| ||||| ||||| | ||||| |||| || | || || | ||| | | || |
Sbjct 321 AATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACGTTCT 262
Query 180786 TTCATGTTGTTTGTGCCTGTTATGGGTCTATGGA-CATCCTCTATTGGCATTATTGGTCT 180844
| ||||| ||||| || || | ||| || ||| ||| || |||| | || || |
Sbjct 261 GT-ATGTTATTTGTACCAGTAACTGGTTTACGGATCATTA-CTTTTGGGGTAGTTAGTTT 204
Query 180845 TGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCC 180904
|| || ||||| |||||||| || || || | |||| || | | ||||||||||||
Sbjct 203 GGCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATCC 144
Query 180905 TGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGGTT 180964
| | || ||||| ||||||||||| | || | || || ||||| | |||| ||| |
Sbjct 143 TTATTT-GAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTGGGTGGAT 85
Query 180965 GGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCA 181019
|| | | ||| | | || |||||| | || ||| || |||| |||||||||
Sbjct 84 GGGAGTTCAAGATTAGCTTCATGAAAACCTTATATTCGCTAAAGAGGTTCTACCA 30
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608620410100800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |