Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq88322 105 9e-18 seq6366 102 1e-16 seq15189 100 4e-16 >seq88322 Length=2502 Score = 105 bits (116), Expect = 9e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| ||||| || | |||||||||||||| ||||||||| || ||| | || | Sbjct 897 AGTTCCAGCATTGAAAAGAGTAGGAGATGCGTGGGTGAACCATCGTTGAGACATCATGTG 838 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| |||| || ||| || ||||| || || ||||| || | |||||| | |||||| Sbjct 837 GTAAGTTTTAACAGCAGAGTCTATGTCATCCTTGTGAATCCCAACCGCGACTCTCATCAA 778 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | ||| || || | | ||||| ||||| || | || || Sbjct 777 CATGTGTTGCGGCCTTTCCACAACCTTCCCTTGAACCTTCAAGAGGTAAGACCTCTCAAG 718 Query 70170 AGTTTTAAACCCAAAATA 70187 ||||| ||||||||||| Sbjct 717 GGTTTTGAACCCAAAATA 700 >seq6366 Length=10312 Score = 102 bits (112), Expect = 1e-16 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 69792 CAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGC 69851 || ||| |||| ||||||||| ||| | |||||||| | | || ||||| || | || Sbjct 181 CAACATTGGAAAAATACCATTTGATGTCCCATTTGTGCAACGGATGTAACTACCCGTGGC 240 Query 69852 GCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACG 69911 |||||||| || ||| | ||| ||||| || || ||| || | |||||| Sbjct 241 ACGAATATTGTGAACAGAAACACCAATTCCACCAGCTGATTTGCTAATGATAGCACACTC 300 Query 69912 TTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||||||||| |||||||| ||||||||| ||||| | ||| || || || Sbjct 301 CTTCAAAGTGTCATATATTCCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACT 360 Query 69972 A 69972 | Sbjct 361 A 361 >seq15189 Length=5727 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| ||||| || | || | |||||| | ||| | || | | ||| |||| ||| || Sbjct 2085 TCCCCCCTGGTCAACATAGCGGGCAGTATCATTGAACACACGTAACATTGGAACAATGCC 2026 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 || || | |||||||| ||| ||||||||| || | || ||||| || | ||| Sbjct 2025 GTTGGACGTCCCATTTGTCCCACGAATATAACTGCCCTTAGCACGAATGTTGTGGACAGA 1966 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || ||| || | |||||| ||||| || |||||||| Sbjct 1965 CACACCAATTCCTCCAGCTGATTTGCTAATGATAGCACACTCCTTCAAAGTTTCATATAT 1906 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||||||||||||||| ||||| | ||| || || ||| Sbjct 1905 CCCCTCTATGCTATCATCGTTCATGCACACAAGGAAGCAACTA 1863 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||||||||| || | || |||||||| ||||||||||| || ||| | ||| | | Sbjct 1728 GTTCCCGCATTGAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTGAGACATCAGGTGG 1669 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| | ||| || || || || || ||||||||| | || || | ||||||| Sbjct 1668 TAAGTTTTGACAGCAGAGTCAATGTCTTCCTTATGAATTCCAACAGCAACCCTCATCAAC 1609 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || || |||| ||| || ||| | | || || ||||| || | | || Sbjct 1608 ATGTGTTGTGGTCTTTCCACAACCTTACCTTGAACCTTTAAGAGGTAGGACCTCTTAAGG 1549 Query 70171 GTTTTAAACCCAAAATA 70187 ||||| || |||||||| Sbjct 1548 GTTTTGAAACCAAAATA 1532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684985154837400