Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq88322 105 9e-18
seq6366 102 1e-16
seq15189 100 4e-16
>seq88322
Length=2502
Score = 105 bits (116), Expect = 9e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
|||||| ||||| || | |||||||||||||| ||||||||| || ||| | || |
Sbjct 897 AGTTCCAGCATTGAAAAGAGTAGGAGATGCGTGGGTGAACCATCGTTGAGACATCATGTG 838
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
||| |||| || ||| || ||||| || || ||||| || | |||||| | ||||||
Sbjct 837 GTAAGTTTTAACAGCAGAGTCTATGTCATCCTTGTGAATCCCAACCGCGACTCTCATCAA 778
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
||| || || || | ||| || || | | ||||| ||||| || | || ||
Sbjct 777 CATGTGTTGCGGCCTTTCCACAACCTTCCCTTGAACCTTCAAGAGGTAAGACCTCTCAAG 718
Query 70170 AGTTTTAAACCCAAAATA 70187
||||| |||||||||||
Sbjct 717 GGTTTTGAACCCAAAATA 700
>seq6366
Length=10312
Score = 102 bits (112), Expect = 1e-16
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 69792 CAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGC 69851
|| ||| |||| ||||||||| ||| | |||||||| | | || ||||| || | ||
Sbjct 181 CAACATTGGAAAAATACCATTTGATGTCCCATTTGTGCAACGGATGTAACTACCCGTGGC 240
Query 69852 GCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACG 69911
|||||||| || ||| | ||| ||||| || || ||| || | ||||||
Sbjct 241 ACGAATATTGTGAACAGAAACACCAATTCCACCAGCTGATTTGCTAATGATAGCACACTC 300
Query 69912 TTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
||||| ||||||||||| |||||||| ||||||||| ||||| | ||| || || ||
Sbjct 301 CTTCAAAGTGTCATATATTCCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACT 360
Query 69972 A 69972
|
Sbjct 361 A 361
>seq15189
Length=5727
Score = 100 bits (110), Expect = 4e-16
Identities = 156/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
||| ||||| || | || | |||||| | ||| | || | | ||| |||| ||| ||
Sbjct 2085 TCCCCCCTGGTCAACATAGCGGGCAGTATCATTGAACACACGTAACATTGGAACAATGCC 2026
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
|| || | |||||||| ||| ||||||||| || | || ||||| || | |||
Sbjct 2025 GTTGGACGTCCCATTTGTCCCACGAATATAACTGCCCTTAGCACGAATGTTGTGGACAGA 1966
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||| |||||||| || ||| || | |||||| ||||| || ||||||||
Sbjct 1965 CACACCAATTCCTCCAGCTGATTTGCTAATGATAGCACACTCCTTCAAAGTTTCATATAT 1906
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
||||||||||||||||| ||||| | ||| || || |||
Sbjct 1905 CCCCTCTATGCTATCATCGTTCATGCACACAAGGAAGCAACTA 1863
Score = 89.7 bits (98), Expect = 7e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
||||||||||| || | || |||||||| ||||||||||| || ||| | ||| | |
Sbjct 1728 GTTCCCGCATTGAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTGAGACATCAGGTGG 1669
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
|| |||| | ||| || || || || || ||||||||| | || || | |||||||
Sbjct 1668 TAAGTTTTGACAGCAGAGTCAATGTCTTCCTTATGAATTCCAACAGCAACCCTCATCAAC 1609
Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170
|| || || |||| ||| || ||| | | || || ||||| || | | ||
Sbjct 1608 ATGTGTTGTGGTCTTTCCACAACCTTACCTTGAACCTTTAAGAGGTAGGACCTCTTAAGG 1549
Query 70171 GTTTTAAACCCAAAATA 70187
||||| || ||||||||
Sbjct 1548 GTTTTGAAACCAAAATA 1532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 684985154837400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |