Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq39107 111 1e-19 seq78764 109 5e-19 seq158136 98.7 8e-16 seq54380 96.9 3e-15 >seq39107 Length=55737 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| || | ||||| || | ||| || || || ||||||||||| ||| Sbjct 41162 TGCCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGG 41103 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | | | || ||||| |||||||| || |||| | | ||||||||||| | Sbjct 41102 CAAGGGTTCTCCCATCCTCGAGTTGTTTACCAGCAAAAATTAACCTTTGTTGATCCGGAG 41043 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||||||| || |||||| || | | || | ||||| | | ||| | Sbjct 41042 GGATACCCTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTA 40983 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || || | ||||| |||| ||||||||||||||| ||||| Sbjct 40982 CTTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCAT 40934 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| || | ||||| || | ||| || || |||||||| ||||| || Sbjct 26325 TGCCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAG 26266 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | |||| || || |||||||| ||| |||| | | ||| |||||||| | Sbjct 26265 CAAGGGTTCTTCCGTCCTCAAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAG 26206 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| ||||| || |||||| |||| | || | || || | || ||| | Sbjct 26205 GGATACCTTCTTTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCA 26146 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || |||| ||| || |||| ||||||||| ||||||||||| Sbjct 26145 CCTCCAGGGTGATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 26097 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| || | ||||| || | ||| || || |||||||| ||||| || Sbjct 29648 TGCCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAG 29589 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | |||| || || |||||||| ||| |||| | | ||| |||||||| | Sbjct 29588 CAAGGGTTCTTCCGTCCTCAAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAG 29529 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| ||||| || |||||| |||| | || | || || | || ||| | Sbjct 29528 GGATACCTTCTTTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCA 29469 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || |||| ||| || |||| ||||||||| ||||||||||| Sbjct 29468 CCTCCAGGGTGATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 29420 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| || | ||||| || | ||| || || |||||||| ||||| || Sbjct 46579 TGCCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCAG 46520 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | |||| || || |||||||| ||| |||| | | ||| |||||||| | Sbjct 46519 CAAGGGTTCTTCCGTCCTCAAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCCGGAG 46460 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| ||||| || |||||| |||| | || | || || | || ||| | Sbjct 46459 GGATACCTTCTTTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCAGAGGATTCCA 46400 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || |||| ||| || |||| ||||||||| ||||||||||| Sbjct 46399 CCTCCAGGGTGATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 46351 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | || ||| ||||| || | ||||| ||||| || || || || || Sbjct 16779 TGCCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCTTTCTGGATGTTATAATCCG 16720 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | | ||||| |||||||| ||||| | || || | ||| || || || | Sbjct 16719 CAAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGG 16660 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| ||||| |||||| ||| | | || | || |||| || | Sbjct 16659 GAATACCCTCCTTATCCTGAATCTTGGCTTTAACATTATCAATGGTATCTGAACTCTCCA 16600 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | || |||| ||| || |||| ||| ||||||||||||||||| Sbjct 16599 CCTCCAAGGTAATAGTTTTCCCGGTCAAAGTCTTCACAAAGATTTGCAT 16551 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | || ||| ||||| || | ||||| ||||| || || || || || Sbjct 26553 TGCCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCTTTCTGGATGTTATAATCCG 26494 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | | ||||| |||||||| ||||| | || || | ||| || || || | Sbjct 26493 CAAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGG 26434 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| ||||| |||||| ||| | | || | || |||| || | Sbjct 26433 GAATACCCTCCTTATCCTGAATCTTGGCTTTAACATTATCAATGGTATCTGAACTCTCCA 26374 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | || |||| ||| || |||| ||| ||||||||||||||||| Sbjct 26373 CCTCCAAGGTAATAGTTTTCCCGGTCAAAGTCTTCACAAAGATTTGCAT 26325 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | || ||| ||||| || | ||||| ||||| || || || || || Sbjct 29876 TGCCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCTTTCTGGATGTTATAATCCG 29817 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | | ||||| |||||||| ||||| | || || | ||| || || || | Sbjct 29816 CAAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGG 29757 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| ||||| |||||| ||| | | || | || |||| || | Sbjct 29756 GAATACCCTCCTTATCCTGAATCTTGGCTTTAACATTATCAATGGTATCTGAACTCTCCA 29697 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | || |||| ||| || |||| ||| ||||||||||||||||| Sbjct 29696 CCTCCAAGGTAATAGTTTTCCCGGTCAAAGTCTTCACAAAGATTTGCAT 29648 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | || ||| ||||| || | ||||| ||||| || || || || || Sbjct 41390 TGCCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCTTTCTGGATGTTATAATCCG 41331 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | | ||||| |||||||| |||||| | || || | ||| || || || | Sbjct 41330 CAAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCGAAGATAAGCCTCTGCTGGTCTGGGG 41271 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| ||||| |||||| ||||| | || | || |||| || | Sbjct 41270 GAATACCCTCCTTATCCTGAATCTTGGCTTTCACATTATCAATGGTATCTGAACTCTCGA 41211 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | || || |||| ||| || |||||||||||||| Sbjct 41210 CCTCAAGGGTAATGGTCTTCCCAGTCAAAGTCTTGACAAAGATTTGCAT 41162 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| || | ||||| || | ||| || || || ||||||||||| ||| Sbjct 48553 TGCCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGG 48494 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | | || || || |||||||| || |||| || | ||| |||||||| | Sbjct 48493 CAAGGGTCCTTCCATCCTCCAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAG 48434 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || ||||||| || | | || | || |||| || | Sbjct 48433 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCA 48374 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || | ||||| | ||| || || | ||| |||||||| || |||||| Sbjct 48373 CCTCCAAGGTTATGGTTTTTCCAGTTAAAGTCTTCACAAAAATCTGCATA 48324 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| || | ||||| || | ||| || || || ||||||||||| ||| Sbjct 49816 TGCCACCCCTCAAACGAAGCACCAAGTGGAGCGTGGACTCCTTCTGAATATTGTAATCGG 49757 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | | || || || |||||||| || |||| || | ||| |||||||| | Sbjct 49756 CAAGGGTCCTTCCATCCTCCAGTTGTTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAG 49697 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || ||||||| || | | || | || |||| || | Sbjct 49696 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCA 49637 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || | ||||| | ||| || || | ||| |||||||| || |||||| Sbjct 49636 CCTCCAAGGTTATGGTTTTTCCAGTTAAAGTCTTCACAAAAATCTGCATA 49587 >seq78764 Length=1181 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 27060 TTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATG 27119 || || || ||||||||| | | |||| | || |||||||| || |||||| | ||| Sbjct 415 TTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATG 356 Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 |||||||| ||||||||||| | |||||| || || ||||||| |||| | || Sbjct 355 AGACGCTGCTGATCCGGCGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCG 296 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | ||||| | | ||||| || || || || | || ||||| || |||||||| || Sbjct 295 ATTGTGTCCGAAGACTCAACCTCAAGGGTAATGGTCTTCCCCGTAAGGGTTTTCACGAAT 236 Query 27240 ATTTGCATAGCTGCT 27254 || ||||| | |||| Sbjct 235 ATCTGCATCGTTGCT 221 >seq158136 Length=352 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| ||||| ||||| ||||| ||| | | | || | || || Sbjct 229 ACCAAATGCAGGGTAGACTCTTTCTGAATGTTGTAATCGGCAAGGGTTCGGCCATCCTCA 170 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| || || ||||||| | || || || || || | ||||||||| || Sbjct 169 AGCTGTTTTCCAGCAAAAATGAGCCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGA 110 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||| | | ||| ||||| ||||| || | || Sbjct 109 ATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTTTCCACTTCAAGAGTGATTGTCTTT 50 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||||| || ||||||||||||||||| Sbjct 49 CCCGTCAATGTCTTCACAAAGATTTGCAT 21 >seq54380 Length=3212 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||| |||||||| || ||| Sbjct 2202 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 2143 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| ||||||||||| | |||||| || || ||||||| ||| Sbjct 2142 GCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGGATCTTGGCCTTC 2083 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 | | || | ||||| | | ||||| || || || || | ||| ||||| Sbjct 2082 ACATTATCGATTGTGTCCGAAGACTCAACCTCAAGGGTAATGGTTTTCCCCGT 2030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423774147826920