Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq205188 118 1e-21 seq95679 113 6e-20 seq222699 107 2e-18 seq15189 105 8e-18 seq12236 93.3 5e-14 seq88322 91.5 2e-13 seq217650 86.0 8e-12 seq64330 86.0 8e-12 seq58436 84.2 3e-11 >seq205188 Length=846 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 ||||||||||| || ||||| || ||||| || |||||| || ||||||||||| ||| Sbjct 1 TGGAGACCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCTGGCATGAGGCCC 60 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 || ||||| | ||| | || | ||| || |||||||||||||| ||||| || || Sbjct 61 CGTTTCTTGAGCCAGAAGATGGAGCAAAAGCTTCCGGAGAAGAAGATTCCCTCAACGCAG 120 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820 ||||| || | | ||| |||||||||||| Sbjct 121 GCAAATGCGACGATGCGCTCGGCGAAGGAG 150 >seq95679 Length=4182 Score = 113 bits (124), Expect = 6e-20 Identities = 274/406 (67%), Gaps = 12/406 (3%) Strand=Plus/Plus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATT---GTCAAAGCCATCCATCTCGGTG 11557 |||||||| ||||| || | | |||||| | || || ||| |||||||| || ||| Sbjct 2276 TTAGTGGCAGCAATGACTATGACGCCAGTGT--TTCCAGTAAAA-CCATCCATTTCAGTG 2332 Query 11558 AGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT-GGCATACCACCAGCACTGCG 11616 || || ||||| | |||||||||||| ||||||||| || | || ||| | | | Sbjct 2333 AGCAACTGATTCAGTGTTTGTTCTCTTTCATCATTTCCTCCACCTA-TACCTGTTCCTCT 2391 Query 11617 TTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGC 11676 | | | || || ||||| |||||||||||||| || | ||||||| ||||| ||| Sbjct 2392 CTTCCTTCCTACAGCATCTATCTCATCAATGAACACCAAACATGGTGAATTTTGCTTGGC 2451 Query 11677 GATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTT 11736 | | || | ||| | |||||| ||| || ||||| ||||||||||| | || | Sbjct 2452 CTTATTGAACAAATCCCTGACCCTTGAGGCCCCTACACCCACAAACATCTCAATGAACTC 2511 Query 11737 TGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAG 11796 || |||| || ||| || || | || || || || || ||| || | Sbjct 2512 TGATCCAGATAGGGAGAAGAAAGGAACCCCAGCCTCTCCTGCAATTGCCTTGGCCAGCAA 2571 Query 11797 GGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC-AC 11855 |||||||| || || || || | ||||| | ||| ||| || ||||| || || Sbjct 2572 TGTCTTTCCAGTCCCAGGAGGCCCTACCAGAAGAACCCCTTTGGGAATTTTGGCTCCAAC 2631 Query 11856 TTC-CAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTT 11900 | |||| ||||| |||| ||| | || || |||||||||| Sbjct 2632 GGCAGAAAACTTCTCTGGGGT--CTTCAAGAACTCAACAATCTCTT 2675 >seq222699 Length=2956 Score = 107 bits (118), Expect = 2e-18 Identities = 141/195 (72%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || || |||||||| || || ||||| || |||||| || || ||||| | || Sbjct 655 GTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGGCCGGGCATCAAGCC 596 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | |||| | || | |||||| |||||||||||||| ||||| || || Sbjct 595 GCGCTTCTTTAGCCAAAATATCGAGCAGAAGCTGCCGGAGAAGAAGATTCCCTCGACGCA 536 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || || | ||||| ||||| |||||| | | ||||| | ||| || || Sbjct 535 GGCGAAGGCGACGAGGCGCTCGGCAAAGGAGTCGG---TGGCATCGATCCAGCGCAAGGC 479 Query 122850 CCATTTCGCCTTCTT 122864 ||||| |||||||| Sbjct 478 CCATTGGGCCTTCTT 464 >seq15189 Length=5727 Score = 105 bits (116), Expect = 8e-18 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| ||||| ||||| || |||||||| || ||||| | ||| ||| ||||| | ||| Sbjct 1741 CTGTGGTCTAGGTGTTCCCGCATTGAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTG 1682 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| || ||| || | | |||| |||||||||||| || || || | || Sbjct 1681 AGACATCAGGTGGTAAGTTTTGACAGCAGAGTCAATGTCTTCCTTATGAATTCCAACAGC 1622 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118 |||| ||| ||||||| ||||| |||||| | | || | || || || | || | Sbjct 1621 AACCCTCATCAACATGTGTTGTGGTCTTTCCACAACCTTACC-TTGAACCTTTAAGAGGT 1563 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCA 112153 || | ||| ||||||||||| |||||| ||| || Sbjct 1562 AGGACCTCTTAAGGGTTTTGAAACCAAAATAATCA 1528 >seq12236 Length=17685 Score = 93.3 bits (102), Expect = 5e-14 Identities = 299/460 (65%), Gaps = 8/460 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||||| || ||||| || | |||||||| | | ||||| Sbjct 12101 TCAAGAATGTCTGCTCTGTTAGTTGCTGCAATGACAATGATGCCAGTATTACCCTCAAAA 12042 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | ||| || | || || ||||| |||||||| || | Sbjct 12041 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGCTCTCTTTCATCATTCCCTCC---A 11985 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| |||| | | || | || || |||||||| ||||||| |||||||| || Sbjct 11984 CCAATTCCAGTTCCTCTCTGTCTTCCAACAGCATCAATTTCATCAACAAAGACAATGCAA 11925 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || || || ||| | | || | ||| ||||| | ||||| ||||||||| Sbjct 11924 GGGGCGTTCTCTTTGGCCTTCTTGAACAAATCACGAACTCGAGAAGCACCAACACCAACA 11865 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGC 11778 |||||||| ||||| | | |||| | || | ||||| ||| | |||||| || Sbjct 11864 AACATCTCAACAAACTCAGAACCAGA-TATTGAAAAAAATGGAACACCAGCTTCACCAGC 11806 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 || || ||| | |||||||| || || ||||| ||| | ||||| | ||| Sbjct 11805 AATAGCCTTGGCCAACAGGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACTCCTTT 11746 Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || || || ||| || | ||||| || | ||| ||||| ||||| | ||| Sbjct 11745 AGGTATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACCTC 11686 Query 11899 TTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 || || | ||||| | || | ||| |||||||| Sbjct 11685 CATAAAGTCCTGCTTGGCTTCATCCACCCCAGCAACATCA 11646 Score = 93.3 bits (102), Expect = 5e-14 Identities = 299/460 (65%), Gaps = 8/460 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||||| || ||||| || | |||||||| | | ||||| Sbjct 15970 TCAAGAATGTCTGCTCTGTTAGTTGCTGCAATGACAATGATGCCAGTATTACCCTCAAAA 15911 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | ||| || | || || ||||| |||||||| || | Sbjct 15910 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGCTCTCTTTCATCATTCCCTCC---A 15854 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| |||| | | || | || || |||||||| ||||||| |||||||| || Sbjct 15853 CCAATTCCAGTTCCTCTCTGTCTTCCAACAGCATCAATTTCATCAACAAAGACAATGCAA 15794 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || || || ||| | | || | ||| ||||| | ||||| ||||||||| Sbjct 15793 GGGGCGTTCTCTTTGGCCTTCTTGAACAAATCACGAACTCGAGAAGCACCAACACCAACA 15734 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGC 11778 |||||||| ||||| | | |||| | || | ||||| ||| | |||||| || Sbjct 15733 AACATCTCAACAAACTCAGAACCAGA-TATTGAAAAAAATGGAACACCAGCTTCACCAGC 15675 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 || || ||| | |||||||| || || ||||| ||| | ||||| | ||| Sbjct 15674 AATAGCCTTGGCCAACAGGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACTCCTTT 15615 Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || || || ||| || | ||||| || | ||| ||||| ||||| | ||| Sbjct 15614 AGGTATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACCTC 15555 Query 11899 TTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 || || | ||||| | || | ||| |||||||| Sbjct 15554 CATAAAGTCCTGCTTGGCTTCATCCACCCCAGCAACATCA 15515 >seq88322 Length=2502 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || || || || ||||||||||| || || || | |||||| ||||| | ||| Sbjct 908 TGAGGCCTAGGAGTTCCAGCATTGAAAAGAGTAGGAGATGCGTGGGTGAACCATCGTTGA 849 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| ||| ||| || | | |||| || ||||| ||| ||| || || | ||| Sbjct 848 GACATCATGTGGTAAGTTTTAACAGCAGAGTCTATGTCATCCTTGTGAATCCCAACCGCG 789 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 112118 || | ||| ||||||| || || |||||| | | || | || || || |||| | Sbjct 788 ACTCTCATCAACATGTGTTGCGGCCTTTCCA-CAACCTTCCCTTGAACC-TTCAAGAGGT 731 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | | ||||||||||||||| ||||| ||| || | || |||||| Sbjct 730 AAGACCTCTCAAGGGTTTTGAACCCAAAATAATCATAGTCGAAGTCCC 683 >seq217650 Length=1534 Score = 86.0 bits (94), Expect = 8e-12 Identities = 247/376 (66%), Gaps = 12/376 (3%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || || | || ||||| || ||||| |||||||| || | Sbjct 1178 AAACCCATCCATCTCCGTCAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTGCCA-- 1121 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | || || | | ||| | ||||| || ||||||||||||||||| ||||| Sbjct 1120 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCCACGGCGTCAATCTCATCAATGAAAACAATG 1061 Query 11657 CATGGT---TGATT-TTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 || ||| | ||| ||| || | ||||| | ||| | ||||| ||||| || Sbjct 1060 CACGGTGCCTTATTCTTC----GCCTTCTCAAACAAATCCCTCACCCTCGACGCACCAAC 1005 Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTC 11772 || ||||||| |||||| || | | || | |||| || || || ||| | ||| Sbjct 1004 CCCCACAAACAGCTCCACGAATTCCGAAGCCGCGCACGAGAAAAACGGCACACCCGCTTC 945 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGC 11832 || || | || | || || || ||||| || || || || ||| | ||||| Sbjct 944 CCCAGCCACAGCCCTAGCCAGAAGCGTCTTCCCGGTTCCCGGTGGTCCCACCAGAAGACA 885 Query 11833 GCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 || || ||||| ||||| || || | || || | ||| | |||||| || Sbjct 884 CCCCTTCGGAATCTTCGCACCCAGCGCAGTGTACTTATCAGGGTTCTTCAAAAAATCAAC 825 Query 11893 AATCTCTTCAAGTTCA 11908 || ||||| || ||| Sbjct 824 AACCTCTTGCAGCTCA 809 >seq64330 Length=14123 Score = 86.0 bits (94), Expect = 8e-12 Identities = 247/376 (66%), Gaps = 12/376 (3%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || || | || ||||| || ||||| |||||||| || | Sbjct 8587 AAACCCATCCATCTCCGTCAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTGCCA-- 8644 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | || || | | ||| | ||||| || ||||||||||||||||| ||||| Sbjct 8645 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCCACGGCGTCAATCTCATCAATGAAAACAATG 8704 Query 11657 CATGGT---TGATT-TTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 || ||| | ||| ||| || | ||||| | ||| | ||||| ||||| || Sbjct 8705 CACGGTGCCTTATTCTTC----GCCTTCTCAAACAAATCCCTCACCCTCGACGCACCAAC 8760 Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTC 11772 || ||||||| |||||| || | | || | |||| || || || ||| | ||| Sbjct 8761 CCCCACAAACAGCTCCACGAATTCCGAAGCCGCGCACGAGAAAAACGGCACACCCGCTTC 8820 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGC 11832 || || | || | || || || ||||| || || || || ||| | ||||| Sbjct 8821 CCCAGCCACAGCCCTAGCCAGAAGCGTCTTCCCGGTTCCCGGTGGTCCCACCAGAAGACA 8880 Query 11833 GCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 || || ||||| ||||| || || | || || | ||| | |||||| || Sbjct 8881 CCCCTTCGGAATCTTCGCACCCAGCGCAGTGTACTTATCAGGGTTCTTCAAAAAATCAAC 8940 Query 11893 AATCTCTTCAAGTTCA 11908 || ||||| || ||| Sbjct 8941 AACCTCTTGCAGCTCA 8956 >seq58436 Length=10304 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 145287 TATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGT 145346 ||| |||||||||| | |||||||||||||||||||||||||| ||||| | ||| ||| Sbjct 9586 TATGGTGTAGTGGTTAGCACTTTGGACTTTGAATCCAACAACCTGGGTTCGACTCCCGGT 9645 Query 145347 AGGAGCTTT 145355 |||| |||| Sbjct 9646 AGGACCTTT 9654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626273235636000