Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq205188 118 1e-21
seq95679 113 6e-20
seq222699 107 2e-18
seq15189 105 8e-18
seq12236 93.3 5e-14
seq88322 91.5 2e-13
seq217650 86.0 8e-12
seq64330 86.0 8e-12
seq58436 84.2 3e-11
>seq205188
Length=846
Score = 118 bits (130), Expect = 1e-21
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730
||||||||||| || ||||| || ||||| || |||||| || ||||||||||| |||
Sbjct 1 TGGAGACCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCTGGCATGAGGCCC 60
Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790
|| ||||| | ||| | || | ||| || |||||||||||||| ||||| || ||
Sbjct 61 CGTTTCTTGAGCCAGAAGATGGAGCAAAAGCTTCCGGAGAAGAAGATTCCCTCAACGCAG 120
Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820
||||| || | | ||| ||||||||||||
Sbjct 121 GCAAATGCGACGATGCGCTCGGCGAAGGAG 150
>seq95679
Length=4182
Score = 113 bits (124), Expect = 6e-20
Identities = 274/406 (67%), Gaps = 12/406 (3%)
Strand=Plus/Plus
Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATT---GTCAAAGCCATCCATCTCGGTG 11557
|||||||| ||||| || | | |||||| | || || ||| |||||||| || |||
Sbjct 2276 TTAGTGGCAGCAATGACTATGACGCCAGTGT--TTCCAGTAAAA-CCATCCATTTCAGTG 2332
Query 11558 AGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT-GGCATACCACCAGCACTGCG 11616
|| || ||||| | |||||||||||| ||||||||| || | || ||| | | |
Sbjct 2333 AGCAACTGATTCAGTGTTTGTTCTCTTTCATCATTTCCTCCACCTA-TACCTGTTCCTCT 2391
Query 11617 TTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGC 11676
| | | || || ||||| |||||||||||||| || | ||||||| ||||| |||
Sbjct 2392 CTTCCTTCCTACAGCATCTATCTCATCAATGAACACCAAACATGGTGAATTTTGCTTGGC 2451
Query 11677 GATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTT 11736
| | || | ||| | |||||| ||| || ||||| ||||||||||| | || |
Sbjct 2452 CTTATTGAACAAATCCCTGACCCTTGAGGCCCCTACACCCACAAACATCTCAATGAACTC 2511
Query 11737 TGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAG 11796
|| |||| || ||| || || | || || || || || ||| || |
Sbjct 2512 TGATCCAGATAGGGAGAAGAAAGGAACCCCAGCCTCTCCTGCAATTGCCTTGGCCAGCAA 2571
Query 11797 GGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC-AC 11855
|||||||| || || || || | ||||| | ||| ||| || ||||| || ||
Sbjct 2572 TGTCTTTCCAGTCCCAGGAGGCCCTACCAGAAGAACCCCTTTGGGAATTTTGGCTCCAAC 2631
Query 11856 TTC-CAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTT 11900
| |||| ||||| |||| ||| | || || ||||||||||
Sbjct 2632 GGCAGAAAACTTCTCTGGGGT--CTTCAAGAACTCAACAATCTCTT 2675
>seq222699
Length=2956
Score = 107 bits (118), Expect = 2e-18
Identities = 141/195 (72%), Gaps = 3/195 (2%)
Strand=Plus/Minus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
||| || || |||||||| || || ||||| || |||||| || || ||||| | ||
Sbjct 655 GTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGGCCGGGCATCAAGCC 596
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|||||||| | |||| | || | |||||| |||||||||||||| ||||| || ||
Sbjct 595 GCGCTTCTTTAGCCAAAATATCGAGCAGAAGCTGCCGGAGAAGAAGATTCCCTCGACGCA 536
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849
|| || || | ||||| ||||| |||||| | | ||||| | ||| || ||
Sbjct 535 GGCGAAGGCGACGAGGCGCTCGGCAAAGGAGTCGG---TGGCATCGATCCAGCGCAAGGC 479
Query 122850 CCATTTCGCCTTCTT 122864
||||| ||||||||
Sbjct 478 CCATTGGGCCTTCTT 464
>seq15189
Length=5727
Score = 105 bits (116), Expect = 8e-18
Identities = 154/215 (72%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999
||| ||||| ||||| || |||||||| || ||||| | ||| ||| ||||| | |||
Sbjct 1741 CTGTGGTCTAGGTGTTCCCGCATTGAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTG 1682
Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059
|||||| || ||| || | | |||| |||||||||||| || || || | ||
Sbjct 1681 AGACATCAGGTGGTAAGTTTTGACAGCAGAGTCAATGTCTTCCTTATGAATTCCAACAGC 1622
Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118
|||| ||| ||||||| ||||| |||||| | | || | || || || | || |
Sbjct 1621 AACCCTCATCAACATGTGTTGTGGTCTTTCCACAACCTTACC-TTGAACCTTTAAGAGGT 1563
Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCA 112153
|| | ||| ||||||||||| |||||| ||| ||
Sbjct 1562 AGGACCTCTTAAGGGTTTTGAAACCAAAATAATCA 1528
>seq12236
Length=17685
Score = 93.3 bits (102), Expect = 5e-14
Identities = 299/460 (65%), Gaps = 8/460 (2%)
Strand=Plus/Minus
Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542
||||| || || | | ||||| || ||||| || | |||||||| | | |||||
Sbjct 12101 TCAAGAATGTCTGCTCTGTTAGTTGCTGCAATGACAATGATGCCAGTATTACCCTCAAAA 12042
Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602
|||||||| || || | | ||| || | || || ||||| |||||||| || |
Sbjct 12041 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGCTCTCTTTCATCATTCCCTCC---A 11985
Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659
||| |||| | | || | || || |||||||| ||||||| |||||||| ||
Sbjct 11984 CCAATTCCAGTTCCTCTCTGTCTTCCAACAGCATCAATTTCATCAACAAAGACAATGCAA 11925
Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719
|| || || ||| | | || | ||| ||||| | ||||| |||||||||
Sbjct 11924 GGGGCGTTCTCTTTGGCCTTCTTGAACAAATCACGAACTCGAGAAGCACCAACACCAACA 11865
Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGC 11778
|||||||| ||||| | | |||| | || | ||||| ||| | |||||| ||
Sbjct 11864 AACATCTCAACAAACTCAGAACCAGA-TATTGAAAAAAATGGAACACCAGCTTCACCAGC 11806
Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838
|| || ||| | |||||||| || || ||||| ||| | ||||| | |||
Sbjct 11805 AATAGCCTTGGCCAACAGGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACTCCTTT 11746
Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898
|| || || ||| || | ||||| || | ||| ||||| ||||| | |||
Sbjct 11745 AGGTATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACCTC 11686
Query 11899 TTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938
|| || | ||||| | || | ||| ||||||||
Sbjct 11685 CATAAAGTCCTGCTTGGCTTCATCCACCCCAGCAACATCA 11646
Score = 93.3 bits (102), Expect = 5e-14
Identities = 299/460 (65%), Gaps = 8/460 (2%)
Strand=Plus/Minus
Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542
||||| || || | | ||||| || ||||| || | |||||||| | | |||||
Sbjct 15970 TCAAGAATGTCTGCTCTGTTAGTTGCTGCAATGACAATGATGCCAGTATTACCCTCAAAA 15911
Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602
|||||||| || || | | ||| || | || || ||||| |||||||| || |
Sbjct 15910 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGCTCTCTTTCATCATTCCCTCC---A 15854
Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659
||| |||| | | || | || || |||||||| ||||||| |||||||| ||
Sbjct 15853 CCAATTCCAGTTCCTCTCTGTCTTCCAACAGCATCAATTTCATCAACAAAGACAATGCAA 15794
Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719
|| || || ||| | | || | ||| ||||| | ||||| |||||||||
Sbjct 15793 GGGGCGTTCTCTTTGGCCTTCTTGAACAAATCACGAACTCGAGAAGCACCAACACCAACA 15734
Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGC 11778
|||||||| ||||| | | |||| | || | ||||| ||| | |||||| ||
Sbjct 15733 AACATCTCAACAAACTCAGAACCAGA-TATTGAAAAAAATGGAACACCAGCTTCACCAGC 15675
Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838
|| || ||| | |||||||| || || ||||| ||| | ||||| | |||
Sbjct 15674 AATAGCCTTGGCCAACAGGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACTCCTTT 15615
Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898
|| || || ||| || | ||||| || | ||| ||||| ||||| | |||
Sbjct 15614 AGGTATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACCTC 15555
Query 11899 TTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938
|| || | ||||| | || | ||| ||||||||
Sbjct 15554 CATAAAGTCCTGCTTGGCTTCATCCACCCCAGCAACATCA 15515
>seq88322
Length=2502
Score = 91.5 bits (100), Expect = 2e-13
Identities = 159/228 (70%), Gaps = 4/228 (2%)
Strand=Plus/Minus
Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000
|| || || || || ||||||||||| || || || | |||||| ||||| | |||
Sbjct 908 TGAGGCCTAGGAGTTCCAGCATTGAAAAGAGTAGGAGATGCGTGGGTGAACCATCGTTGA 849
Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060
|||||| ||| ||| || | | |||| || ||||| ||| ||| || || | |||
Sbjct 848 GACATCATGTGGTAAGTTTTAACAGCAGAGTCTATGTCATCCTTGTGAATCCCAACCGCG 789
Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 112118
|| | ||| ||||||| || || |||||| | | || | || || || |||| |
Sbjct 788 ACTCTCATCAACATGTGTTGCGGCCTTTCCA-CAACCTTCCCTTGAACC-TTCAAGAGGT 731
Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166
| | ||||||||||||||| ||||| ||| || | || ||||||
Sbjct 730 AAGACCTCTCAAGGGTTTTGAACCCAAAATAATCATAGTCGAAGTCCC 683
>seq217650
Length=1534
Score = 86.0 bits (94), Expect = 8e-12
Identities = 247/376 (66%), Gaps = 12/376 (3%)
Strand=Plus/Minus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
||| ||||||||||| || || | || ||||| || ||||| |||||||| || |
Sbjct 1178 AAACCCATCCATCTCCGTCAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTGCCA-- 1121
Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656
| | | | || || | | ||| | ||||| || ||||||||||||||||| |||||
Sbjct 1120 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCCACGGCGTCAATCTCATCAATGAAAACAATG 1061
Query 11657 CATGGT---TGATT-TTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712
|| ||| | ||| ||| || | ||||| | ||| | ||||| ||||| ||
Sbjct 1060 CACGGTGCCTTATTCTTC----GCCTTCTCAAACAAATCCCTCACCCTCGACGCACCAAC 1005
Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTC 11772
|| ||||||| |||||| || | | || | |||| || || || ||| | |||
Sbjct 1004 CCCCACAAACAGCTCCACGAATTCCGAAGCCGCGCACGAGAAAAACGGCACACCCGCTTC 945
Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGC 11832
|| || | || | || || || ||||| || || || || ||| | |||||
Sbjct 944 CCCAGCCACAGCCCTAGCCAGAAGCGTCTTCCCGGTTCCCGGTGGTCCCACCAGAAGACA 885
Query 11833 GCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892
|| || ||||| ||||| || || | || || | ||| | |||||| ||
Sbjct 884 CCCCTTCGGAATCTTCGCACCCAGCGCAGTGTACTTATCAGGGTTCTTCAAAAAATCAAC 825
Query 11893 AATCTCTTCAAGTTCA 11908
|| ||||| || |||
Sbjct 824 AACCTCTTGCAGCTCA 809
>seq64330
Length=14123
Score = 86.0 bits (94), Expect = 8e-12
Identities = 247/376 (66%), Gaps = 12/376 (3%)
Strand=Plus/Plus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
||| ||||||||||| || || | || ||||| || ||||| |||||||| || |
Sbjct 8587 AAACCCATCCATCTCCGTCAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTGCCA-- 8644
Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656
| | | | || || | | ||| | ||||| || ||||||||||||||||| |||||
Sbjct 8645 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCCACGGCGTCAATCTCATCAATGAAAACAATG 8704
Query 11657 CATGGT---TGATT-TTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712
|| ||| | ||| ||| || | ||||| | ||| | ||||| ||||| ||
Sbjct 8705 CACGGTGCCTTATTCTTC----GCCTTCTCAAACAAATCCCTCACCCTCGACGCACCAAC 8760
Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTC 11772
|| ||||||| |||||| || | | || | |||| || || || ||| | |||
Sbjct 8761 CCCCACAAACAGCTCCACGAATTCCGAAGCCGCGCACGAGAAAAACGGCACACCCGCTTC 8820
Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGC 11832
|| || | || | || || || ||||| || || || || ||| | |||||
Sbjct 8821 CCCAGCCACAGCCCTAGCCAGAAGCGTCTTCCCGGTTCCCGGTGGTCCCACCAGAAGACA 8880
Query 11833 GCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892
|| || ||||| ||||| || || | || || | ||| | |||||| ||
Sbjct 8881 CCCCTTCGGAATCTTCGCACCCAGCGCAGTGTACTTATCAGGGTTCTTCAAAAAATCAAC 8940
Query 11893 AATCTCTTCAAGTTCA 11908
|| ||||| || |||
Sbjct 8941 AACCTCTTGCAGCTCA 8956
>seq58436
Length=10304
Score = 84.2 bits (92), Expect = 3e-11
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 145287 TATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGT 145346
||| |||||||||| | |||||||||||||||||||||||||| ||||| | ||| |||
Sbjct 9586 TATGGTGTAGTGGTTAGCACTTTGGACTTTGAATCCAACAACCTGGGTTCGACTCCCGGT 9645
Query 145347 AGGAGCTTT 145355
|||| ||||
Sbjct 9646 AGGACCTTT 9654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 626273235636000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |