Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq205188 127 3e-24 seq222699 122 1e-22 seq12236 91.5 2e-13 seq217650 87.8 2e-12 seq64330 87.8 2e-12 >seq205188 Length=846 Score = 127 bits (140), Expect = 3e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 |||||||||||||| |||||||||||||| || |||||| || ||||||||||| ||| Sbjct 1 TGGAGACCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGTCCTGGCATGAGGCCC 60 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 || ||||| | |||||| || | ||||| || ||||||||||| ||||| || || Sbjct 61 CGTTTCTTGAGCCAGAAGATGGAGCAAAAGCTTCCGGAGAAGAAGATTCCCTCAACGCAG 120 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGAG 130177 || || || | || ||||| || |||||| Sbjct 121 GCAAATGCGACGATGCGCTCGGCGAAGGAG 150 >seq222699 Length=2956 Score = 122 bits (134), Expect = 1e-22 Identities = 186/262 (71%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || || || || || || |||||||| || |||||| || || ||||| | || Sbjct 655 GTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGGCCGGGCATCAAGCC 596 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | ||| || |||| || || ||| ||||||||||| ||||| || || Sbjct 595 GCGCTTCTTTAGCCAAAATATCGAGCAGAAGCTGCCGGAGAAGAAGATTCCCTCGACGCA 536 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 ||||| || | ||| ||||| ||||||||| || | | ||| | ||| || || Sbjct 535 GGCGAAGGCGACGAGGCGCTCGGCAAAGGAGTCGG---TGGCATCGATCCAGCGCAAGGC 479 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 130266 ||| || ||||| || ||| ||| |||| ||| | | || || || | ||||| Sbjct 478 CCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCTACGGCGCGGAACAGGTGATTCTT 419 Query 130267 TTCTGATGGA-TCTTTGATGTA 130287 ||| | |||| ||||||||||| Sbjct 418 TTC-GGTGGAGTCTTTGATGTA 398 >seq12236 Length=17685 Score = 91.5 bits (100), Expect = 2e-13 Identities = 246/369 (67%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| || ||||| | | | ||| |||||| || || | ||| || || || Sbjct 16001 ATCAAACCGTCCTGGTCTCAATAAGGCAGAGTCAAGAATGTCTGCTCTGTTAGTTGCTGC 15942 Query 14125 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184 ||||||| |||||| || | ||||| |||||||| || ||||| ||||| |||| Sbjct 15941 AATGACAATGATGCCAGTATTACCCTCAAAACCATCCATTTCTGTCAAAAGTTGGTTGAG 15882 Query 14185 GGTTTGTTCGCGTTCATCATTCGC---AGGCATACCACCCGCACTGCGTTGCTTACCGAC 14241 ||| || || | |||||||||| | | || ||| | || || ||| || || Sbjct 15881 GGTCTGCTCTCTTTCATCATTCCCTCCACCAATTCCAGTTCCTCTCTGT--CTT-CCAAC 15825 Query 14242 GGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA--AAG 14299 || ||||||||||| | || || || || || || || ||| |||| || Sbjct 15824 AGCATCAATTTCATCAACAAAGACAATGCAAGGGGCGTTCTCTTTGGC--CTTCTTGAAC 15767 Query 14300 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 14359 | ||| || |||| ||||| ||||| ||||||||||| ||||| | | | | | Sbjct 15766 AAATCACGAACTCGAGAAGCACCAACACCAACAAACATCTCAACAAACTCAGAACCAG-A 15708 Query 14360 CATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 14418 |||| | || || || || |||||| || || || ||| | ||||||||||| Sbjct 15707 TATTGAAAAAAATGGAACACCAGCTTCACCAGCAATAGCCTTGGCCAACAGGGTCTTCCC 15648 Query 14419 CGTCCCTGG 14427 || ||||| Sbjct 15647 AGTTCCTGG 15639 Score = 89.7 bits (98), Expect = 6e-13 Identities = 245/368 (67%), Gaps = 12/368 (3%) Strand=Plus/Minus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 ||||| || ||||| | | | ||| |||||| || || | ||| || || || Sbjct 12131 TCAAACCGTCCTGGTCTCAATAAGGCAGAGTCAAGAATGTCTGCTCTGTTAGTTGCTGCA 12072 Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185 ||||||| |||||| || | ||||| |||||||| || ||||| ||||| |||| | Sbjct 12071 ATGACAATGATGCCAGTATTACCCTCAAAACCATCCATTTCTGTCAAAAGTTGGTTGAGG 12012 Query 14186 GTTTGTTCGCGTTCATCATTCGC---AGGCATACCACCCGCACTGCGTTGCTTACCGACG 14242 || || || | |||||||||| | | || ||| | || || ||| || || Sbjct 12011 GTCTGCTCTCTTTCATCATTCCCTCCACCAATTCCAGTTCCTCTCTGT--CTT-CCAACA 11955 Query 14243 GCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA--AAGA 14300 || ||||||||||| | || || || || || || || ||| |||| || | Sbjct 11954 GCATCAATTTCATCAACAAAGACAATGCAAGGGGCGTTCTCTTTGGC--CTTCTTGAACA 11897 Query 14301 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAAC 14360 ||| || |||| ||||| ||||| ||||||||||| ||||| | | | | | Sbjct 11896 AATCACGAACTCGAGAAGCACCAACACCAACAAACATCTCAACAAACTCAGAACCAG-AT 11838 Query 14361 ATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCC 14419 |||| | || || || || |||||| || || || ||| | ||||||||||| Sbjct 11837 ATTGAAAAAAATGGAACACCAGCTTCACCAGCAATAGCCTTGGCCAACAGGGTCTTCCCA 11778 Query 14420 GTCCCTGG 14427 || ||||| Sbjct 11777 GTTCCTGG 11770 >seq217650 Length=1534 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||| |||| || || || ||||| ||||| | ||||| || || Sbjct 1178 AAACCCATCCATCTCCGTCAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTGCCA-- 1121 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | | | ||||| | | ||| | || ||||||||||| ||||| |||||||| || Sbjct 1120 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCCACGGCGTCAATCTCATCAATGAAAACAATG 1061 Query 14270 CATGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || ||| || ||| | | | ||||| | ||| | ||| ||| ||||| || || Sbjct 1060 CACGGTGCCTTATTCTTCGCCTTC-TCAAACAAATCCCTCACCCTCGACGCACCAACCCC 1002 Query 14329 CACAAACATCTCCACAAA 14346 |||||||| |||||| || Sbjct 1001 CACAAACAGCTCCACGAA 984 >seq64330 Length=14123 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||| |||| || || || ||||| ||||| | ||||| || || Sbjct 8587 AAACCCATCCATCTCCGTCAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTGCCA-- 8644 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | | | ||||| | | ||| | || ||||||||||| ||||| |||||||| || Sbjct 8645 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCCACGGCGTCAATCTCATCAATGAAAACAATG 8704 Query 14270 CATGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || ||| || ||| | | | ||||| | ||| | ||| ||| ||||| || || Sbjct 8705 CACGGTGCCTTATTCTTCGCCTTC-TCAAACAAATCCCTCACCCTCGACGCACCAACCCC 8763 Query 14329 CACAAACATCTCCACAAA 14346 |||||||| |||||| || Sbjct 8764 CACAAACAGCTCCACGAA 8781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616703310874600