Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq205188 138 1e-27 seq15189 116 4e-21 seq222699 113 5e-20 seq12236 107 2e-18 seq88322 104 3e-17 seq217650 98.7 1e-15 seq64330 98.7 1e-15 seq177272 91.5 2e-13 seq25689 86.0 7e-12 >seq205188 Length=846 Score = 138 bits (152), Expect = 1e-27 Identities = 120/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| || |||||||||| || |||||||| ||||||||||| || | Sbjct 149 TCCTTCGCCGAGCGCATCGTCGCATTTGCCTGCGTTGAGGGAATCTTCTTCTCCGGAAGC 90 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || ||| | || | ||||||||||| || || ||||||||||| ||| |||||||||| Sbjct 89 TTTTGCTCCATCTTCTGGCTCAAGAAACGGGGCCTCATGCCAGGACTCACCTTCTCCAAC 30 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCA 94943 || || ||||| || |||||||| ||||| Sbjct 29 GAACTCATCTCCCGCGACGAGGGTCTCCA 1 >seq15189 Length=5727 Score = 116 bits (128), Expect = 4e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 104148 ACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCTCGATGGT 104206 ||| || |||||||||| ||||||||||| ||| | ||| || | || || || | | Sbjct 1524 ACTATGATTATTTTGGTTTCAAAACCCTTAAGAGGTCCTACCTCTTAAAGGTTCAAGGTA 1583 Query 104207 GTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAA 104266 ||| |||||| ||||| ||||||| ||| | || || | || |||||| |||| Sbjct 1584 AGGTTG-TGGAAAGACCACAACACATGTTGATGAGGGTTGCTGTTGGAATTCATAAGGAA 1642 Query 104267 GACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCA 104326 |||||||| |||| | | || ||| || |||||| ||| | ||||| ||| ||| Sbjct 1643 GACATTGACTCTGCTGTCAAAACTTACCACCTGATGTCTCAACGGTGGTTCACTCATGCA 1702 Query 104327 ACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 | ||||| || |||||||| || ||||| ||||| || Sbjct 1703 TCTCCAACTCTTTTCAATGCGGGAACACCTAGACCACA 1740 >seq222699 Length=2956 Score = 113 bits (124), Expect = 5e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 |||||||| ||||| ||| |||| || || || || ||||| ||||||||||| || | Sbjct 506 TCCTTTGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCCGGCAGC 565 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||| | || | |||||| |||||||| || | ||||| || ||| |||||||||| Sbjct 566 TTCTGCTCGATATTTTGGCTAAAGAAGCGCGGCTTGATGCCCGGCCTCACCTTCTCCAAC 625 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || || || || || || || || || ||| Sbjct 626 GAACTCATATCGCGAGATGAAGGGCTTCAC 655 >seq12236 Length=17685 Score = 107 bits (118), Expect = 2e-18 Identities = 277/416 (67%), Gaps = 12/416 (3%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | || || || || ||||||| || || || | | |||||| Sbjct 12101 TCAAGAATGTCTGCTCTGTTAGTTGCTGCAATGACAATGATGCCAGTATTACCCTCAAAA 12042 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||||||||||||| | || || || | |||||||||| || | Sbjct 12041 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGCTCTCTTTCATCATTCCCT---CCA 11985 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| |||| | | || |||| || |||||||| ||||||| ||||| ||||| Sbjct 11984 CCAATTCCAGTTCCTCTCTGTCTTCCAACAGCATCAATTTCATCAACAAAGACAATGCAA 11925 Query 9734 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 || | ||| | | |||| || | ||| || || || || || ||||||| Sbjct 11924 GG--GGCGTTCTCTTTGGCCTTCTTGAACAAATCACGAACTCGAGAAGCACCAACACCAA 11867 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9850 |||||||||| ||||| | | | | | |||| | || || ||| || |||||| Sbjct 11866 CAAACATCTCAACAAACTCAGAACCAG-ATATTGAAAAAAATGGAACACCAGCTTCACCA 11808 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 ||||| || ||| | || ||||| || || ||||| ||| | || || | ||| Sbjct 11807 GCAATAGCCTTGGCCAACAGGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACTCCT 11748 Query 9911 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 || || || ||| || | | |||||||| | ||| ||||| ||||| Sbjct 11747 TTAGGTATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 11692 Score = 107 bits (118), Expect = 2e-18 Identities = 277/416 (67%), Gaps = 12/416 (3%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | || || || || ||||||| || || || | | |||||| Sbjct 15970 TCAAGAATGTCTGCTCTGTTAGTTGCTGCAATGACAATGATGCCAGTATTACCCTCAAAA 15911 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||||||||||||| | || || || | |||||||||| || | Sbjct 15910 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGCTCTCTTTCATCATTCCCT---CCA 15854 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| |||| | | || |||| || |||||||| ||||||| ||||| ||||| Sbjct 15853 CCAATTCCAGTTCCTCTCTGTCTTCCAACAGCATCAATTTCATCAACAAAGACAATGCAA 15794 Query 9734 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 || | ||| | | |||| || | ||| || || || || || ||||||| Sbjct 15793 GG--GGCGTTCTCTTTGGCCTTCTTGAACAAATCACGAACTCGAGAAGCACCAACACCAA 15736 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9850 |||||||||| ||||| | | | | | |||| | || || ||| || |||||| Sbjct 15735 CAAACATCTCAACAAACTCAGAACCAG-ATATTGAAAAAAATGGAACACCAGCTTCACCA 15677 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 ||||| || ||| | || ||||| || || ||||| ||| | || || | ||| Sbjct 15676 GCAATAGCCTTGGCCAACAGGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACTCCT 15617 Query 9911 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 || || || ||| || | | |||||||| | ||| ||||| ||||| Sbjct 15616 TTAGGTATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 15561 >seq88322 Length=2502 Score = 104 bits (114), Expect = 3e-17 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 104195 || |||| ||||| || ||||||||| ||||||||||||||| | || |||| || Sbjct 682 AGGGACTTCGACTATGATTATTTTGGGTTCAAAACCCTTGAGAGGTCTTACCTCTTGAA- 740 Query 104196 GGCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTA 104255 || || | || ||| |||||| || || ||||||| ||| | || || | || | Sbjct 741 GGTTCAAGGGAAGGTTG-TGGAAAGGCCGCAACACATGTTGATGAGAGTCGCGGTTGGGA 799 Query 104256 TTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 104315 |||| ||| ||||| || |||| | | || ||| ||| |||||| ||| | || Sbjct 800 TTCACAAGGATGACATAGACTCTGCTGTTAAAACTTACCACATGATGTCTCAACGATGGT 859 Query 104316 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| |||||| | || || || ||||||||||| || || || || ||| Sbjct 860 TCACCCACGCATCTCCTACTCTTTTCAATGCTGGAACTCCTAGGCCTCAA 909 >seq217650 Length=1534 Score = 98.7 bits (108), Expect = 1e-15 Identities = 249/372 (67%), Gaps = 14/372 (4%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCT 9670 ||| ||||||||||| |||| ||| |||||||| || ||||||| ||||| || | | Sbjct 1178 AAACCCATCCATCTCCGTCAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTGCCACC 1119 Query 9671 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 || | || || | | ||| | |||||||| ||||||||||||||||| || ||| Sbjct 1118 TCCAAGC--CCCGCCCCTCTCTGCCTCCCCACGGCGTCAATCTCATCAATGAAAACAATG 1061 Query 9731 CATGGT---TGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCAC 9786 || ||| | ||| ||||| | ||||| | ||||| || | | || || || Sbjct 1060 CACGGTGCCTTATTCTTCGCCTTC----TCAAACAAATCCCTCACCCTCGACGCACCAAC 1005 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 || ||||||| |||||| || | | || | || || || || ||| | ||| Sbjct 1004 CCCCACAAACAGCTCCACGAATTCCGAAGCCGCGCACGAGAAAAACGGCACACCCGCTTC 945 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 || || | || | || ||||| ||||| || || || || ||| | | || | | Sbjct 944 CCCAGCCACAGCCCTAGCCAGAAGCGTCTTCCCGGTTCCCGGTGGTCCCACCA-GAAGAC 886 Query 9907 ACCTCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCA 9965 ||| | | |||||||| || || || ||| | ||||| | ||| | |||||| | Sbjct 885 ACCCCTTCGGAATCTTCGCACCCAGCGCAGTGTACTTATCAGGGTTCTTCAAAAAATCAA 826 Query 9966 CAATTTCTTCCA 9977 ||| |||| || Sbjct 825 CAACCTCTTGCA 814 >seq64330 Length=14123 Score = 98.7 bits (108), Expect = 1e-15 Identities = 249/372 (67%), Gaps = 14/372 (4%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCT 9670 ||| ||||||||||| |||| ||| |||||||| || ||||||| ||||| || | | Sbjct 8587 AAACCCATCCATCTCCGTCAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTGCCACC 8646 Query 9671 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 || | || || | | ||| | |||||||| ||||||||||||||||| || ||| Sbjct 8647 TCCAAGC--CCCGCCCCTCTCTGCCTCCCCACGGCGTCAATCTCATCAATGAAAACAATG 8704 Query 9731 CATGGT---TGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCAC 9786 || ||| | ||| ||||| | ||||| | ||||| || | | || || || Sbjct 8705 CACGGTGCCTTATTCTTCGCCTTC----TCAAACAAATCCCTCACCCTCGACGCACCAAC 8760 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 || ||||||| |||||| || | | || | || || || || ||| | ||| Sbjct 8761 CCCCACAAACAGCTCCACGAATTCCGAAGCCGCGCACGAGAAAAACGGCACACCCGCTTC 8820 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 || || | || | || ||||| ||||| || || || || ||| | | || | | Sbjct 8821 CCCAGCCACAGCCCTAGCCAGAAGCGTCTTCCCGGTTCCCGGTGGTCCCACCA-GAAGAC 8879 Query 9907 ACCTCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCA 9965 ||| | | |||||||| || || || ||| | ||||| | ||| | |||||| | Sbjct 8880 ACCCCTTCGGAATCTTCGCACCCAGCGCAGTGTACTTATCAGGGTTCTTCAAAAAATCAA 8939 Query 9966 CAATTTCTTCCA 9977 ||| |||| || Sbjct 8940 CAACCTCTTGCA 8951 >seq177272 Length=479 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || ||| | | || || || || ||||||| ||||| || | | ||||| Sbjct 353 ATCAAGAATGTCAGCCCTGTTAGTAGCTGCAATGACAATGATACCGGTATTACCCTCAAA 412 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 |||||||| ||||||||||||||||||| || ||||| | |||||||||| || Sbjct 413 TCCATCCATTTCTGTCAAAAGTTGGTTAAGGGTCTGTTCTCTTTCATCATTCCCT 467 >seq25689 Length=4009 Score = 86.0 bits (94), Expect = 7e-12 Identities = 189/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 9691 TTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC 9750 |||| |||| || |||||||| ||||||| || || |||||||| ||| || || Sbjct 4002 TTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCATGGAGCATTCTCTTTGGC 3943 Query 9751 GACTTCA--AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAG 9808 |||| || | ||| || || || || || ||||||||||||||||||||||| Sbjct 3942 --CTTCTTGAATAAATCGCGGACTCGGGAAGCACCAACACCAACAAACATCTCCACAAAC 3885 Query 9809 TTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 9867 | | | | | |||| || || |||||| | |||||| ||||| || || | Sbjct 3884 TCAGAACCTG-AGATTGAGAAAAATGGGACACCTGCTTCACCTGCAATAGCCTTTGCTAA 3826 Query 9868 AAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 ||| ||||| || || || || ||| | || || ||||| ||| || || || Sbjct 3825 AAGTGTCTTCCCAGTTCCAGGAGGACCAACAAGAAGAACACCTTTTGGTATGCGAGCCCC 3766 Query 9928 ACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 | || | |||||||||| | |||||||| ||||| Sbjct 3765 AACAGCAGTGAATCTCTCAGGCTTTTTAAGAAATTCCAC 3727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581627414583400