Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq205188 140 4e-28 seq222699 127 2e-24 >seq205188 Length=846 Score = 140 bits (154), Expect = 4e-28 Identities = 373/561 (66%), Gaps = 8/561 (1%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || ||||| | ||||| | | |||| |||| |||||||| | || |||||| Sbjct 557 TTCCCTATCCAATACCCCCAAATCTGGGAAATGTACAAGAAAGCAGAAGCCTCGTTCTGG 498 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681 | | |||||| | || ||| | ||| | | ||||| ||| |||| ||| | Sbjct 497 ACGGCGGAGGAGGTCGATCTCTCTCAGGACATCAGCCATTGGAACACTCTCACCGACGGC 438 Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741 |||| |||||||||| ||||| ||||||||||| || || || || || | Sbjct 437 GAGCGCCATTTCATCACCCACGTCCTTGCCTTCTTCGCCGCCTCCGACGGCATCGTACTC 378 Query 59742 GAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTAC 59801 ||||| | | | ||| ||||| |||||| | |||||||||| | || ||| Sbjct 377 GAAAACCTCGCCGGCCGTTTTATGAAGGAGGTCCAGGTCTCCGAGGCCCGCGCCTTTTAC 318 Query 59802 GCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAA 59860 | | ||| ||| || |||| || |||||||||| |||| ||| | |||| | Sbjct 317 GGCTTCCAGATCGC-CATCGAGAACATTCACTCCGAGATGTACAGCCTCCTCCTCGAAAC 259 Query 59861 GTTGGTCAAGGA-TCCGGA-AGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCC 59918 | | || || |||| | ||| ||| | |||| || | ||||| || || ||| Sbjct 258 CTACATAAAAGACTCCGTAGAGAAAAGCC--GTCTCTTTCACGCCATTGACACCATTCCC 201 Query 59919 GCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGC 59977 || | | || || | |||||| | | ||||| || || | | || || || Sbjct 200 TGTGTCACCAAGAAGGCCAACTGGGCCCTCCGCTGGATCGACTCTTCCGAC-TCCTTCGC 142 Query 59978 ACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGC 60037 | || || | || ||||| ||||| || |||||||||||||| || || || | Sbjct 141 CGAGCGCATCGTCGCATTTGCCTGCGTTGAGGGAATCTTCTTCTCCGGAAGCTTTTGCTC 82 Query 60038 TATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||||||||||| || || ||||||||||| || || | ||||||||||| || || Sbjct 81 CATCTTCTGGCTCAAGAAACGGGGCCTCATGCCAGGACTCACCTTCTCCAACGAACTCAT 22 Query 60098 TTCCCGGGACGAGGGCCTCCA 60118 ||||| |||||||| ||||| Sbjct 21 CTCCCGCGACGAGGGTCTCCA 1 >seq222699 Length=2956 Score = 127 bits (140), Expect = 2e-24 Identities = 538/835 (64%), Gaps = 16/835 (2%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| |||||||| | || |||||| ||| ||| ||| |||| || || ||||| Sbjct 129 TGTACAAGAAAGCCGAAGCCTCTTTCTGGACCGCCGAAGAGGTTGATCTTTCCCAAGACC 188 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | | |||||| |||| ||| ||||| | ||||||| ||||| |||| Sbjct 189 TCCGCCACTGGGACTCCCTCACCGACGGCGAGCGCTACTTCATCACCCACGTCCTCGCCT 248 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 |||| || || || || || || | ||||| | | | ||| ||||| Sbjct 249 TCTTTGCCGCCTCCGACGGCATCGTTCTCGAAAACCTCGCCGCCCGCTTCATGAAGGAAA 308 Query 59773 TCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCAC 59831 |||| ||||||||||| | ||||||| | ||| ||| || |||| |||||| Sbjct 309 TCCAAGCCGCCGAGGCCCGTGCTTTCTACGGCTTCCAGATCGC-CATCGAGAACATCCAC 367 Query 59832 TCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGA-TCCG--GAAGAGAAGGCT 59888 ||||||| |||| ||| | | || | | |||| || ||| ||| |||| | Sbjct 368 TCCGAGATGTACAGTCTCCTCTTGGAAACCTACATCAAAGACTCCACCGAAAAGAA---T 424 Query 59889 GGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATG 59948 |||||||| ||| |||| || |||| || | || || |||||||| || Sbjct 425 CACCTGTTCCGCGCCGTAGATACCATCCCCTGTGTCGCCAAGAAGGCCCAATGGGCCTTG 484 Query 59949 CAGTGGATGAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAA 60008 | ||||| | | | || ||||| | || ||| | || || || ||||| || Sbjct 485 CGCTGGATCGATGCCACCGACTCCTTTGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAG 544 Query 60009 GGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATG 60068 |||||||||||||| ||| ||||| | || || ||||| || ||||| ||| | ||| Sbjct 545 GGAATCTTCTTCTCCGGCAGCTTCTGCTCGATATTTTGGCTAAAGAAGCGCGGCTTGATG 604 Query 60069 CCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTT 60128 || ||||| | ||||||||||| || || || || || || || || || || || Sbjct 605 CCCGGCCTCACCTTCTCCAACGAACTCATATCGCGAGATGAAGGGCTTCACTGCGACTTC 664 Query 60129 GCAGTGACGC-TCTATTCACACCTATTGGAAAAATGCCCTTC--CAAGGATATTCACAAG 60185 || ||| | | | || || | ||| ||| || || | | | || | | || Sbjct 665 GC-GTGCCTCTTGTACTCTCTCCT-CAGGAGGAA-GCTCACCGACGAGCGCGTGAAGGAG 721 Query 60186 ATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAA 60245 ||||| | || ||| | ||||| ||||| | || |||||||| || Sbjct 722 ATTGTGCGCGAAGCGGTTGACATAGAGAGAGAGTTTGTGTGCGACGCGCTTCCCTGTGCG 781 Query 60246 CTCATAGGTATGGACGCTGGAG-AAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCT 60304 | | || ||| ||| |||| ||||| || || ||| ||||||| |||||||| | Sbjct 782 TTGGTGGGGATGAACG-GGGAGCTAATGAGTCAATATATTGAGTTTGTTGCGGACCGGTT 840 Query 60305 CATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGA 60364 ||| | ||||| || | ||||| || | || || || ||||||||||| Sbjct 841 GCTGGGTGCGCTTGGATGCGGGAAGGTGTACGGTGTTCAGAATCCCTTTGACTGGATGGA 900 Query 60365 GACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419 | || || | | || || || ||||||||||| ||||| || ||||| ||| Sbjct 901 GCTTATATCTCTCCAGGGCAAAACTAACTTCTTTGAAAAGCGCGTTGGGGACTAT 955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546988690580400