Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq205188 140 4e-28
seq222699 127 2e-24
>seq205188
Length=846
Score = 140 bits (154), Expect = 4e-28
Identities = 373/561 (66%), Gaps = 8/561 (1%)
Strand=Plus/Minus
Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621
|| ||||| | ||||| | | |||| |||| |||||||| | || ||||||
Sbjct 557 TTCCCTATCCAATACCCCCAAATCTGGGAAATGTACAAGAAAGCAGAAGCCTCGTTCTGG 498
Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681
| | |||||| | || ||| | ||| | | ||||| ||| |||| ||| |
Sbjct 497 ACGGCGGAGGAGGTCGATCTCTCTCAGGACATCAGCCATTGGAACACTCTCACCGACGGC 438
Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741
|||| |||||||||| ||||| ||||||||||| || || || || || |
Sbjct 437 GAGCGCCATTTCATCACCCACGTCCTTGCCTTCTTCGCCGCCTCCGACGGCATCGTACTC 378
Query 59742 GAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTAC 59801
||||| | | | ||| ||||| |||||| | |||||||||| | || |||
Sbjct 377 GAAAACCTCGCCGGCCGTTTTATGAAGGAGGTCCAGGTCTCCGAGGCCCGCGCCTTTTAC 318
Query 59802 GCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAA 59860
| | ||| ||| || |||| || |||||||||| |||| ||| | |||| |
Sbjct 317 GGCTTCCAGATCGC-CATCGAGAACATTCACTCCGAGATGTACAGCCTCCTCCTCGAAAC 259
Query 59861 GTTGGTCAAGGA-TCCGGA-AGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCC 59918
| | || || |||| | ||| ||| | |||| || | ||||| || || |||
Sbjct 258 CTACATAAAAGACTCCGTAGAGAAAAGCC--GTCTCTTTCACGCCATTGACACCATTCCC 201
Query 59919 GCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGC 59977
|| | | || || | |||||| | | ||||| || || | | || || ||
Sbjct 200 TGTGTCACCAAGAAGGCCAACTGGGCCCTCCGCTGGATCGACTCTTCCGAC-TCCTTCGC 142
Query 59978 ACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGC 60037
| || || | || ||||| ||||| || |||||||||||||| || || || |
Sbjct 141 CGAGCGCATCGTCGCATTTGCCTGCGTTGAGGGAATCTTCTTCTCCGGAAGCTTTTGCTC 82
Query 60038 TATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097
|| ||||||||||| || || ||||||||||| || || | ||||||||||| || ||
Sbjct 81 CATCTTCTGGCTCAAGAAACGGGGCCTCATGCCAGGACTCACCTTCTCCAACGAACTCAT 22
Query 60098 TTCCCGGGACGAGGGCCTCCA 60118
||||| |||||||| |||||
Sbjct 21 CTCCCGCGACGAGGGTCTCCA 1
>seq222699
Length=2956
Score = 127 bits (140), Expect = 2e-24
Identities = 538/835 (64%), Gaps = 16/835 (2%)
Strand=Plus/Plus
Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652
|||| |||||||| | || |||||| ||| ||| ||| |||| || || |||||
Sbjct 129 TGTACAAGAAAGCCGAAGCCTCTTTCTGGACCGCCGAAGAGGTTGATCTTTCCCAAGACC 188
Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712
| | |||||| |||| ||| ||||| | ||||||| ||||| ||||
Sbjct 189 TCCGCCACTGGGACTCCCTCACCGACGGCGAGCGCTACTTCATCACCCACGTCCTCGCCT 248
Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772
|||| || || || || || || | ||||| | | | ||| |||||
Sbjct 249 TCTTTGCCGCCTCCGACGGCATCGTTCTCGAAAACCTCGCCGCCCGCTTCATGAAGGAAA 308
Query 59773 TCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCAC 59831
|||| ||||||||||| | ||||||| | ||| ||| || |||| ||||||
Sbjct 309 TCCAAGCCGCCGAGGCCCGTGCTTTCTACGGCTTCCAGATCGC-CATCGAGAACATCCAC 367
Query 59832 TCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGA-TCCG--GAAGAGAAGGCT 59888
||||||| |||| ||| | | || | | |||| || ||| ||| |||| |
Sbjct 368 TCCGAGATGTACAGTCTCCTCTTGGAAACCTACATCAAAGACTCCACCGAAAAGAA---T 424
Query 59889 GGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATG 59948
|||||||| ||| |||| || |||| || | || || |||||||| ||
Sbjct 425 CACCTGTTCCGCGCCGTAGATACCATCCCCTGTGTCGCCAAGAAGGCCCAATGGGCCTTG 484
Query 59949 CAGTGGATGAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAA 60008
| ||||| | | | || ||||| | || ||| | || || || ||||| ||
Sbjct 485 CGCTGGATCGATGCCACCGACTCCTTTGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAG 544
Query 60009 GGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATG 60068
|||||||||||||| ||| ||||| | || || ||||| || ||||| ||| | |||
Sbjct 545 GGAATCTTCTTCTCCGGCAGCTTCTGCTCGATATTTTGGCTAAAGAAGCGCGGCTTGATG 604
Query 60069 CCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTT 60128
|| ||||| | ||||||||||| || || || || || || || || || || ||
Sbjct 605 CCCGGCCTCACCTTCTCCAACGAACTCATATCGCGAGATGAAGGGCTTCACTGCGACTTC 664
Query 60129 GCAGTGACGC-TCTATTCACACCTATTGGAAAAATGCCCTTC--CAAGGATATTCACAAG 60185
|| ||| | | | || || | ||| ||| || || | | | || | | ||
Sbjct 665 GC-GTGCCTCTTGTACTCTCTCCT-CAGGAGGAA-GCTCACCGACGAGCGCGTGAAGGAG 721
Query 60186 ATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAA 60245
||||| | || ||| | ||||| ||||| | || |||||||| ||
Sbjct 722 ATTGTGCGCGAAGCGGTTGACATAGAGAGAGAGTTTGTGTGCGACGCGCTTCCCTGTGCG 781
Query 60246 CTCATAGGTATGGACGCTGGAG-AAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCT 60304
| | || ||| ||| |||| ||||| || || ||| ||||||| |||||||| |
Sbjct 782 TTGGTGGGGATGAACG-GGGAGCTAATGAGTCAATATATTGAGTTTGTTGCGGACCGGTT 840
Query 60305 CATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGA 60364
||| | ||||| || | ||||| || | || || || |||||||||||
Sbjct 841 GCTGGGTGCGCTTGGATGCGGGAAGGTGTACGGTGTTCAGAATCCCTTTGACTGGATGGA 900
Query 60365 GACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419
| || || | | || || || ||||||||||| ||||| || ||||| |||
Sbjct 901 GCTTATATCTCTCCAGGGCAAAACTAACTTCTTTGAAAAGCGCGTTGGGGACTAT 955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546988690580400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |