Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq205188 109 6e-19 seq34680 87.8 2e-12 seq66253 84.2 2e-11 >seq205188 Length=846 Score = 109 bits (120), Expect = 6e-19 Identities = 324/486 (67%), Gaps = 18/486 (4%) Strand=Plus/Plus Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848 ||| || || || | || || ||||| || || || ||||| | ||| ||||||| || Sbjct 27 TTCGTTGGAGAAGGTGAGTCCTGGCATGAGGCCCCGTTTCTTGAGCCAGAAGATGGAGCA 86 Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 ||| || ||||||||| || || || || ||||| ||||| | ||| | ||||| Sbjct 87 AAAGCTTCCGGAGAAGAAGATTCCCTCAACGCAGGCAAATGCGACGATGCGCTCGGCGAA 146 Query 74909 CGGTGCATCGGAAG--TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGG 74965 || | ||||||| || ||||| | ||||| | || || |||| |||| Sbjct 147 -GGAG--TCGGAAGAGTCGATCCAGCGGAGGGCCCAGTTGGCCTTCTTGGTGACA-CAGG 202 Query 74966 GACAG-TATCGATCGCTTGGAAGAG---GCTTGCCTTCTCTTCGGGATCCTTGACG-AGC 75020 || | | || || || || ||||| |||| |||||| ||| || || | | || Sbjct 203 GAATGGTGTCAATGGCGTGAAAGAGACGGCTT---TTCTCTACGGAGTCTTTTATGTAGG 259 Query 75021 TTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGC 75079 || || | | || |||| |||| || ||||| |||| || ||| |||| | | Sbjct 260 TT-TCGAGGAGGAGGCTGTACATCTCGGAGTGAATGTTCTCGATGG-CGATCTGGAAGCC 317 Query 75080 GTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTC 75139 ||| || | || ||||| | | ||| || ||||| |||| | ||| || || Sbjct 318 GTAAAAGGCGCGGGCCTCGGAGACCTGGACCTCCTTCATAAAACGGCCGGCGAGGTTTTC 377 Query 75140 CATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTC 75199 | ||||||||||| ||||||||||| || || || || |||| || |||||||| Sbjct 378 GAGTACGATGCCGTCGGAGGCGGCGAAGAAGGCAAGGACGTGGGTGATGAAATGGCGCTC 437 Query 75200 ATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGT 75259 |||| ||||| ||| ||||| | | |||| | | ||| | |||||| |||| Sbjct 438 GCCGTCGGTGAGAGTGTTCCAATGGCTGATGTCCTGAGAGAGATCGACCTCCTCCGCCGT 497 Query 75260 CCAGAA 75265 |||||| Sbjct 498 CCAGAA 503 >seq34680 Length=5745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 398 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 457 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 458 TGAGCTATGAAAGCA 472 >seq66253 Length=8278 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 118106 TGTTGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTT 118165 || || || ||||| ||||| || | || || ||| ||||| ||| | | |||||| Sbjct 6641 TGCTGCAGTCCGAGAATCTTCTTTATATTTTGAATTTCTTCATTATCCATTATCTGTTTA 6700 Query 118166 ATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCA 118225 || |||| |||||||| ||| | |||||||| || |||||||| ||| | | ||| Sbjct 6701 CTGCTGGCTTCCCGAACATTGAGTAACTTACCCCTCAAAGGAAACACCCCATAATGGTCT 6760 Query 118226 CGGCCCACAAC 118236 ||||||||||| Sbjct 6761 CGGCCCACAAC 6771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545683555793000