Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq205188 109 6e-19
seq34680 87.8 2e-12
seq66253 84.2 2e-11
>seq205188
Length=846
Score = 109 bits (120), Expect = 6e-19
Identities = 324/486 (67%), Gaps = 18/486 (4%)
Strand=Plus/Plus
Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848
||| || || || | || || ||||| || || || ||||| | ||| ||||||| ||
Sbjct 27 TTCGTTGGAGAAGGTGAGTCCTGGCATGAGGCCCCGTTTCTTGAGCCAGAAGATGGAGCA 86
Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908
||| || ||||||||| || || || || ||||| ||||| | ||| | |||||
Sbjct 87 AAAGCTTCCGGAGAAGAAGATTCCCTCAACGCAGGCAAATGCGACGATGCGCTCGGCGAA 146
Query 74909 CGGTGCATCGGAAG--TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGG 74965
|| | ||||||| || ||||| | ||||| | || || |||| ||||
Sbjct 147 -GGAG--TCGGAAGAGTCGATCCAGCGGAGGGCCCAGTTGGCCTTCTTGGTGACA-CAGG 202
Query 74966 GACAG-TATCGATCGCTTGGAAGAG---GCTTGCCTTCTCTTCGGGATCCTTGACG-AGC 75020
|| | | || || || || ||||| |||| |||||| ||| || || | | ||
Sbjct 203 GAATGGTGTCAATGGCGTGAAAGAGACGGCTT---TTCTCTACGGAGTCTTTTATGTAGG 259
Query 75021 TTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGC 75079
|| || | | || |||| |||| || ||||| |||| || ||| |||| | |
Sbjct 260 TT-TCGAGGAGGAGGCTGTACATCTCGGAGTGAATGTTCTCGATGG-CGATCTGGAAGCC 317
Query 75080 GTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTC 75139
||| || | || ||||| | | ||| || ||||| |||| | ||| || ||
Sbjct 318 GTAAAAGGCGCGGGCCTCGGAGACCTGGACCTCCTTCATAAAACGGCCGGCGAGGTTTTC 377
Query 75140 CATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTC 75199
| ||||||||||| ||||||||||| || || || || |||| || ||||||||
Sbjct 378 GAGTACGATGCCGTCGGAGGCGGCGAAGAAGGCAAGGACGTGGGTGATGAAATGGCGCTC 437
Query 75200 ATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGT 75259
|||| ||||| ||| ||||| | | |||| | | ||| | |||||| ||||
Sbjct 438 GCCGTCGGTGAGAGTGTTCCAATGGCTGATGTCCTGAGAGAGATCGACCTCCTCCGCCGT 497
Query 75260 CCAGAA 75265
||||||
Sbjct 498 CCAGAA 503
>seq34680
Length=5745
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/75 (87%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 398 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 457
Query 79684 TGAGCTACGAAAGCA 79698
||||||| |||||||
Sbjct 458 TGAGCTATGAAAGCA 472
>seq66253
Length=8278
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 118106 TGTTGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTT 118165
|| || || ||||| ||||| || | || || ||| ||||| ||| | | ||||||
Sbjct 6641 TGCTGCAGTCCGAGAATCTTCTTTATATTTTGAATTTCTTCATTATCCATTATCTGTTTA 6700
Query 118166 ATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCA 118225
|| |||| |||||||| ||| | |||||||| || |||||||| ||| | | |||
Sbjct 6701 CTGCTGGCTTCCCGAACATTGAGTAACTTACCCCTCAAAGGAAACACCCCATAATGGTCT 6760
Query 118226 CGGCCCACAAC 118236
|||||||||||
Sbjct 6761 CGGCCCACAAC 6771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 545683555793000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |