Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq80997 174 2e-38 seq95291 161 1e-34 >seq80997 Length=4773 Score = 174 bits (192), Expect = 2e-38 Identities = 258/362 (71%), Gaps = 8/362 (2%) Strand=Plus/Plus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | |||||||| | | | ||||| | | ||| Sbjct 4370 TTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTC-TGTA 4428 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || ||||| || || || || || ||||| || |||||||| || || || Sbjct 4429 TTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 4488 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| ||||||||||| ||||| || || || | | || | || Sbjct 4489 TCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTATTCCTACTTCTGCG 4548 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | || || || || |||||||||||||| | ||||| || ||| | ||| Sbjct 4549 GCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATAC 4608 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCT---TAC 176442 || || || || || |||| |||| | |||||| | | ||| | |||| ||| Sbjct 4609 AACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTAC 4665 Query 176443 ATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCA 176502 ||||| || | ||||||||||||| | || || |||||||||||||| ||||||| Sbjct 4666 ATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCA 4725 Query 176503 TA 176504 || Sbjct 4726 TA 4727 >seq95291 Length=6073 Score = 161 bits (178), Expect = 1e-34 Identities = 261/373 (70%), Gaps = 12/373 (3%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGC---TGCAGCAT 176203 ||||| |||| ||||||| ||| | |||||||| | | | ||||| | | | || Sbjct 6027 TTTACATTGGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCAAATTCTGTAT 5968 Query 176204 GTTTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAG 176263 | |||||| | ||||| || || || || || ||||| || |||||||| || | | Sbjct 5967 TTATTATCGCT---TTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTG 5911 Query 176264 TAGCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAA 176323 | | ||||||||||| ||||||||||| ||||| | || || | | || | || Sbjct 5910 TTTCTGGATCTCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTG 5851 Query 176324 ACGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCT 176383 || || || | || || || || |||||||||||||| | ||||| || ||| | | Sbjct 5850 CGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTAT 5791 Query 176384 ACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTT--- 176440 |||| || || || || |||| |||| | |||||| | | ||| | ||||| Sbjct 5790 ACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCT 5734 Query 176441 ACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTG 176500 ||||||| || | ||||||||||||| | || || |||||||||||||| ||||| Sbjct 5733 ACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTG 5674 Query 176501 CATACTCTGCACC 176513 |||| || || || Sbjct 5673 CATATTCAGCTCC 5661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 601804351651200