Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_028663.1
Length=188632
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 174 2e-38
seq95291 161 1e-34
>seq80997
Length=4773
Score = 174 bits (192), Expect = 2e-38
Identities = 258/362 (71%), Gaps = 8/362 (2%)
Strand=Plus/Plus
Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205
||||| |||| ||||||||||| | |||||||| | | | ||||| | | |||
Sbjct 4370 TTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTC-TGTA 4428
Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265
||||| | || ||||| || || || || || ||||| || |||||||| || || ||
Sbjct 4429 TTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 4488
Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325
| ||||||||||| ||||||||||| ||||| || || || | | || | ||
Sbjct 4489 TCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTATTCCTACTTCTGCG 4548
Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385
|| || || | || || || || |||||||||||||| | ||||| || ||| | |||
Sbjct 4549 GCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATAC 4608
Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCT---TAC 176442
|| || || || || |||| |||| | |||||| | | ||| | |||| |||
Sbjct 4609 AACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTAC 4665
Query 176443 ATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCA 176502
||||| || | ||||||||||||| | || || |||||||||||||| |||||||
Sbjct 4666 ATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCA 4725
Query 176503 TA 176504
||
Sbjct 4726 TA 4727
>seq95291
Length=6073
Score = 161 bits (178), Expect = 1e-34
Identities = 261/373 (70%), Gaps = 12/373 (3%)
Strand=Plus/Minus
Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGC---TGCAGCAT 176203
||||| |||| ||||||| ||| | |||||||| | | | ||||| | | | ||
Sbjct 6027 TTTACATTGGATGGTTTGATGTTTTGATGATTCCTACTTTATTGACTGCAAATTCTGTAT 5968
Query 176204 GTTTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAG 176263
| |||||| | ||||| || || || || || ||||| || |||||||| || | |
Sbjct 5967 TTATTATCGCT---TTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTG 5911
Query 176264 TAGCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAA 176323
| | ||||||||||| ||||||||||| ||||| | || || | | || | ||
Sbjct 5910 TTTCTGGATCTCTACTTTATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTG 5851
Query 176324 ACGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCT 176383
|| || || | || || || || |||||||||||||| | ||||| || ||| | |
Sbjct 5850 CGGCTATAGGTTTGCATTTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTAT 5791
Query 176384 ACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTT--- 176440
|||| || || || || |||| |||| | |||||| | | ||| | |||||
Sbjct 5790 ACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCT 5734
Query 176441 ACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTG 176500
||||||| || | ||||||||||||| | || || |||||||||||||| |||||
Sbjct 5733 ACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTG 5674
Query 176501 CATACTCTGCACC 176513
|||| || || ||
Sbjct 5673 CATATTCAGCTCC 5661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 601804351651200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |