Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq26502 237 5e-58 >seq26502 Length=2726 Score = 237 bits (262), Expect = 5e-58 Identities = 341/476 (72%), Gaps = 10/476 (2%) Strand=Plus/Minus Query 39556 GAGCGTGTCACCCTTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGCGGGATGTTCTC 39615 ||||||||| || ||||||||| |||||| | || |||||| || || || ||| Sbjct 2297 GAGCGTGTCGCCGCGGGCCAGCAGTTCGTAGACGGCGGGGTCGTCGAGACCGAGGTGCTC 2238 Query 39616 CAGGTCGACGTGCTCCCCACGGTTACGACGGATGTTCTCGACGGCGTCGCCCATGATCGT 39675 || |||| | ||| || ||||| |||||||| |||| ||||| |||||||| Sbjct 2237 GAGATCGAGCTCCTCGCCCCGGTTCATGCGGATGTTGTCGAGCGCGTCCGAGATGATCGT 2178 Query 39676 GAGGTTCCGCAGGCCGAGGAAGTCCATCTTGACCGCGCCCATGCTCTCGCACTGGGGGTA 39735 ||||||||| ||||| |||||||||||||||| | || | | ||||||| || || Sbjct 2177 GAGGTTCCGGAGGCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCACGACGGATA 2118 Query 39736 GTCCCACTGCGTGACGGTGACGCCGTCCGCAGGACG-GACCCAC-ACCGGAAGGTGATCG 39793 ||| ||||||||||| | |||||| | || ||| || | ||| | | ||| Sbjct 2117 GTCGAACTGCGTGACGATCTGACCGTCCT--GCTCGCGACGCATGATCGGGATGATGTCG 2060 Query 39794 ACCAGGGGCTCGTTGGACATGATCACACCGGCCGCGTGCACGCCCATCTGGCGAACCAGA 39853 | |||||||||| |||||||| || ||||| |||||||||||| ||| || ||| Sbjct 2059 AGCAGGGGCTCGGACGACATGATGACGCCGGCGGCGTGCACGCCCCACTGCCGCTTCAGC 2000 Query 39854 CCTTCGAGCCCGAGCGCAGTGTCGATCACCTCCTTCGAGTCCTTGTCGTTCTCGTACAGG 39913 || ||||| |||||||| ||||| ||| ||||| || |||| ||||| || Sbjct 1999 CCCTCGAGGCCGAGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGGTCGGTCTCGATGAGA 1940 Query 39914 CCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATCCCCTCCAGG 39973 |||||| ||||| |||||| | ||||||||||||| | | || ||| || || || ||| Sbjct 1939 GCCCGGAACTCGCTCGCCTCCTTGTAGCGCGGGTGCGCGGAGTCGAACATGCCGTCGAGG 1880 Query 39974 GGCATCGACGCGCCCATCACATCGGCCGGG---TACGCCTTGGTCAGCTTCTCGCC 40026 ||||| | ||||| | |||||||| ||||||||| ||| ||| || Sbjct 1879 GGCATGTCCTTCCCCATGA---CGGCCGGGGGCATCGCCTTGGTGAGCCGCTCTCC 1827 Score = 183 bits (202), Expect = 1e-41 Identities = 150/180 (83%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 40167 GGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCT 40226 |||| |||||||||| ||| | ||||||||| |||||||| || ||||| |||||||||| Sbjct 1622 GGTCGTCGAAGTCGACGTCGAAGTCGGGCATCGACACGCGGTCCGGGTTGAGGAACCGCT 1563 Query 40227 CGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAG-GCAGTAGGCGACC 40285 ||||||| || |||||||| || || ||||||||||||||| | ||| ||||||||| Sbjct 1562 CGAAGATCAGACCGTGCTCGAGAGGGTCGAGGTCGGTGATCTTCATCGCA-TAGGCGACC 1504 Query 40286 AGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAG 40345 | |||||| || | ||||| ||||| |||||||||| | |||||| |||||||||||| Sbjct 1503 ATCGAACCCGCACCGGAGCCGCGCCCCGGACCGACCCGGATGCCGTTGTCCTTGGCCCAG 1444 Score = 129 bits (142), Expect = 2e-25 Identities = 150/200 (75%), Gaps = 12/200 (6%) Strand=Plus/Minus Query 39204 CGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTG---CCCATGGCCCGACGCAGCAGGT 39260 || ||| |||| |||| ||||| ||||||||| ||||| || || ||||| | || Sbjct 2718 CGTACTGCTTGTCCAG---CTCGGACTTCTTCTTCTTTCCCATCGCTCGGCGCAGGATGT 2662 Query 39261 CGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGC---CGCCTTCTGCACCTGCTCCT 39317 | ||||| || |||||| | || || | ||||||| |||| | |||||||||| Sbjct 2661 CAGCCTGACCGAGGCTGAACCCGGCCACCTTCTGCGCGATCGCCATG---ACCTGCTCCT 2605 Query 39318 GGTAGATGATGAGCCCGTACGTCGGGTCCAGGATCTCCCGCAGGGGCTCCTCCACCTCGG 39377 ||||||||||||||||||| | | ||||||||||| || |||||| ||| ||||| Sbjct 2604 GGTAGATGATGAGCCCGTAGGACTCCTCCAGGATCTCGGCGAGCGGCTCCGCCAGCTCGG 2545 Query 39378 GGTGAATCGGCGAGATCGCC 39397 |||| ||||| | |||| || Sbjct 2544 GGTGGATCGGGGTGATCTCC 2525 Score = 82.4 bits (90), Expect = 2e-11 Identities = 295/450 (66%), Gaps = 11/450 (2%) Strand=Plus/Minus Query 40717 CTGGACGCAGAGTAGGGCATCGTGCGCCTTGCTCTCGTCGGCCGTGAC-GTAGTGGCTGT 40775 ||| ||||| || ||||| |||| || | | ||||| | ||| |||||| || Sbjct 973 CTGCACGCACAGCAGGGCCGCGTGGGCGTCGGCCTCGT-GCTGGTGGGTGTAGTGCGAGT 915 Query 40776 CGTTGGTGACCACCGGGGTGAGCGCGAGGTGCTTGCCCAGCCGGTAGAGGTC-GTCGCGG 40834 ||||||| |||| | | || |||||| || | || || || || ||| | Sbjct 914 CGTTGGTCGCCACGAGCGGGATGCCGAGGTCTTTCGCGAGACGCAGCAGATCCGTCATG- 856 Query 40835 ACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGTACCGGTCACGACCG 40894 || || ||||||||| ||||||||||||||||||||| |||||| || ||| Sbjct 855 ACCCGGCGCTCGATCGACAGGCCGTGGTCCATGATCTCGGCGAAGTAGTTCTCCTTGCCG 796 Query 40895 AACACCTCCAGGTACCGGCCAGCCTCCGCAACGGCCTGGTCGTACTGCCCGAGGTTGAGC 40954 || | ||| || || | || |||| ||| ||||||||| ||||| ||| Sbjct 795 AAGATGTCCTGGAACTCCGCTGCGGCCGCGCGGGCGGCGTCGTACTGGCCGAGCCGCAGC 736 Query 40955 CGGGTCATGATCGCACCGCCAGGGCAGCCCGTGGTGACGATCAGGCCCTCGTTGTGC-TC 41013 || ||| | | | ||| ||||| ||||| ||| |||| || |||| | || | || Sbjct 735 CGCGTCTGCACCTCTCCGGACGGGCACCCCGTCGTGGCGATGAGCCCCTTGCCGTACGTC 676 Query 41014 GGCGACGAGGTCGAAGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTCTTGGTACGACC 41072 | || || ||| |||||| ||||| ||| | || | ||||| | |||| Sbjct 675 TG-GAGCAGCTCGCGGTCCATACGCGG---CTTGAAGTAGTA-CCCCTCCATGCTCGACA 621 Query 41073 GAGAGCTGAGCTTCATGAGGTTGTGCAGGCCGGTCTTGTTCTCGGCGAGGATCGTGAGGT 41132 | ||||| ||| | ||||||||||| ||| | || ||| | || || | || Sbjct 620 GCGAGCTCAGCCGGAAGAGGTTGTGCATGCCCTCCGTGCTCTGGCTCCACATGGTCATGT 561 Query 41133 GGGTGTACGCACCGCGACCGCTCACGTCGT 41162 |||||||||| || ||| |||||||| Sbjct 560 GGGTGTACGCGCCCGAACCCGACACGTCGT 531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159979652307090