Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq26502 298 2e-76 >seq26502 Length=2726 Score = 298 bits (330), Expect = 2e-76 Identities = 352/473 (74%), Gaps = 4/473 (1%) Strand=Plus/Minus Query 38463 GAGGGTGTCGCCCCTGGCCAGCAGCTCGTAGGTTGCCGGGTCGTCCAGCGGGATGTTCTC 38522 ||| |||||||| | ||||||||| |||||| || |||||||| || || || ||| Sbjct 2297 GAGCGTGTCGCCGCGGGCCAGCAGTTCGTAGACGGCGGGGTCGTCGAGACCGAGGTGCTC 2238 Query 38523 GATGTCGACGTGCTCACCACGGTTGCGGCGGATGTTCTCGACCGCGTCGCCCATGATCGT 38582 || |||| | ||| || ||||| ||||||||| |||| |||||| |||||||| Sbjct 2237 GAGATCGAGCTCCTCGCCCCGGTTCATGCGGATGTTGTCGAGCGCGTCCGAGATGATCGT 2178 Query 38583 GAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGGGCCTCGCAGCTCGGGTA 38642 |||||||||||| || |||||||||||||| | ||| || |||| |||||| ||| || Sbjct 2177 GAGGTTCCGGAGGCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCACGACGGATA 2118 Query 38643 GTCGAACTGCGTGATCGTCACGCCGTCC-GCAGGCCGCACCCACG-TAGGGATGTGGTCG 38700 |||||||||||||| || |||||| || || || || | | |||||| |||| Sbjct 2117 GTCGAACTGCGTGACGATCTGACCGTCCTGCTCGC--GACGCATGATCGGGATGATGTCG 2060 Query 38701 ACCAGCGGCTCGTCAGACATGATCACACCGGCTGCGTGCACGCCCATCTGCCGGACGAGT 38760 | ||| |||||| |||||||| || ||||| |||||||||||| |||||| || Sbjct 2059 AGCAGGGGCTCGGACGACATGATGACGCCGGCGGCGTGCACGCCCCACTGCCGCTTCAGC 2000 Query 38761 CCTTCGAGGCCACGCGCGAGGTCGATGACCTCCTTCGCGTCCTTGTCGTTCTCGTACAGC 38820 || |||||||| ||||| |||||| |||| |||||| || |||| ||||| || Sbjct 1999 CCCTCGAGGCCGAGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGGTCGGTCTCGATGAGA 1940 Query 38821 GCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGGTGATGCCCTCCAGG 38880 ||||||| ||||| |||||| | ||||||||||||| | | || | ||||| || ||| Sbjct 1939 GCCCGGAACTCGCTCGCCTCCTTGTAGCGCGGGTGCGCGGAGTCGAACATGCCGTCGAGG 1880 Query 38881 GGCATCGACGCGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCC 38933 ||||| | ||||| ||| | | || ||||||||| ||| ||| || Sbjct 1879 GGCATGTCCTTCCCCATGACGGCCGGGGGCATCGCCTTGGTGAGCCGCTCTCC 1827 Score = 178 bits (196), Expect = 4e-40 Identities = 314/449 (70%), Gaps = 9/449 (2%) Strand=Plus/Minus Query 39624 CTGGACGCACAGCAGGGCGTCGTGGGCCGCAGCCTCCTCGACCCGCGTGTAGTGCGAGTC 39683 ||| |||||||||||||| ||||||| | ||||| | | |||||||||||||| Sbjct 973 CTGCACGCACAGCAGGGCCGCGTGGGCGTCGGCCTCGTGCTGGTGGGTGTAGTGCGAGTC 914 Query 39684 GTTGGTGACCACCGGGGTGAGACCGAGGCGCTGACCGAGGCGGTAGAGGTC-GTCGCGGA 39742 |||||| |||| | | || |||||| | |||| || || || ||| | | Sbjct 913 GTTGGTCGCCACGAGCGGGATGCCGAGGTCTTTCGCGAGACGCAGCAGATCCGTCATG-A 855 Query 39743 CGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGAAGTTGTCCTTCCCGA 39802 | || ||||||||| ||||||||||||||||||||| |||| |||| ||||| |||| Sbjct 854 CCCGGCGCTCGATCGACAGGCCGTGGTCCATGATCTCGGCGAAGTAGTTCTCCTTGCCGA 795 Query 39803 AGATCTCCCGCCACTTCGCGGCCTCGGCGACGGCCTCCTCGTACTGGCCGAGGTTGAGCC 39862 |||| ||| | ||| ||| || | ||| ||| | |||||||||||||| |||| Sbjct 794 AGATGTCCTGGAACTCCGCTGCGGCCGCGCGGGCGGCGTCGTACTGGCCGAGCCGCAGCC 735 Query 39863 GGGTCATCACTGCGCCACCGGGGCATCCCGTGGTGCCGATCAGGCCCTCTGCGTGCTCCG 39922 | ||| ||| | || ||||| ||||| ||| |||| || |||| ||| | | Sbjct 734 GCGTCTGCACCTCTCCGGACGGGCACCCCGTCGTGGCGATGAGCCCCTTGCCGTACGTCT 675 Query 39923 CCACCAGCTCGGCGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTCGCTGTACGAGCGA 39981 | ||||||| |||||| ||||| ||| | || | ||||| || ||| | Sbjct 674 GGAGCAGCTCGCGGTCCATACGCGG---CTTGAAGTAGTA-CCCCTCCATGCTCGACAGC 619 Query 39982 GAGGAGAGCTTGAACAGGTTGTGCAGGCCGGTCTTGTTCGTGGC-GAGCATGGTCATGTG 40040 ||| ||| ||| |||||||||| ||| | || || |||| |||||||||||| Sbjct 618 GAGCTCAGCCGGAAGAGGTTGTGCATGCCCTCCGTGCTC-TGGCTCCACATGGTCATGTG 560 Query 40041 GGTGTAGGCACCCCGACCGCTCACGTCGT 40069 |||||| || ||| ||| |||||||| Sbjct 559 GGTGTACGCGCCCGAACCCGACACGTCGT 531 Score = 178 bits (196), Expect = 4e-40 Identities = 161/200 (81%), Gaps = 12/200 (6%) Strand=Plus/Minus Query 38111 CGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTG---CCCATGGCGCGACGGAGGAGGT 38167 || ||| |||| ||||| |||| ||||||||| ||||| || || || |||| || Sbjct 2718 CGTACTGCTTGTCCAGC---TCGGACTTCTTCTTCTTTCCCATCGCTCGGCGCAGGATGT 2662 Query 38168 CGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGC---CGCCTTCTGCACCTGCTCCT 38224 | |||||||||||| || ||||||||| ||||||| |||| | |||||||||| Sbjct 2661 CAGCCTGACCGAGGCTGAACCCGGCCACCTTCTGCGCGATCGCCATG---ACCTGCTCCT 2605 Query 38225 GGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGG 38284 ||||||||||||||||| ||| | |||||||||||||| ||||||||| ||| ||||| Sbjct 2604 GGTAGATGATGAGCCCGTAGGACTCCTCCAGGATCTCGGCGAGCGGCTCCGCCAGCTCGG 2545 Query 38285 GGTGGATCGGCGTGATCTCC 38304 |||||||||| ||||||||| Sbjct 2544 GGTGGATCGGGGTGATCTCC 2525 Score = 147 bits (162), Expect = 7e-31 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 39074 GGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCT 39133 |||| |||||||||| ||| | ||||||||| || || || || ||||| |||||||||| Sbjct 1622 GGTCGTCGAAGTCGACGTCGAAGTCGGGCATCGACACGCGGTCCGGGTTGAGGAACCGCT 1563 Query 39134 CGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCA 39193 ||||||| || ||||| || ||||| |||||||||||| | || || ||| ||| Sbjct 1562 CGAAGATCAGACCGTGCTCGAGAGGGTCGAGGTCGGTGATCTTCATCGCATAGGCGACCA 1503 Query 39194 GCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAG 39252 ||| || || | ||||||||||| || ||||||| | |||||| ||||| |||||| Sbjct 1502 TCGAACCCGCACCGGAGCCGCGCCCCGGACCGACCCGGATGCCGTTGTCCTTGGCCCAG 1444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159290291186370