Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_028910.1
Length=55617
Score E
Sequences producing significant alignments: (Bits) Value
seq24349 531 2e-146
>seq24349
Length=3626
Score = 531 bits (588), Expect = 2e-146
Identities = 598/793 (75%), Gaps = 13/793 (2%)
Strand=Plus/Minus
Query 42307 GTGATGCTCGGGCAGGGCATGAACCTGCAGCAGGCCCACACCTGTGTGTACATCGGCATC 42366
||||||||||| ||||||||||||||||||||||| ||||| || | | ||||| ||
Sbjct 2299 GTGATGCTCGGCCAGGGCATGAACCTGCAGCAGGCGCACACGGCCGTCTTCGTCGGCGTC 2240
Query 42367 ACGCACAAGTTCAACGATCTGATCCAGAGCTTGCACCGGATTCAGCGGTTCGGCCAAACC 42426
|| |||| |||||||| ||||||| | ||||||| || ||||| ||||| || |
Sbjct 2239 ACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCATCCAGCGCTTCGGACAG-CA 2181
Query 42427 CATC-CCTGCACAGCCCATTTGATCCACTCCGAAACCGAGCGGGAAGTGGTGCGGGTCAT 42485
| | ||||| | || ||||| || ||||||||||| || | | || | ||
Sbjct 2180 GAGCACCTGCGACGTGCACCTGATCTACGCCGAAACCGAGTCCGA---GATCCGCGACAC 2124
Query 42486 CCGC---GAGAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCGACATCATTCA 42542
|| | | ||| |||| | | ||| || | || || |||| |||| | || |
Sbjct 2123 CCTCCTGGCGAAGTGGGAAGAGCACGACCAGCTCACCGACACCATGAGCGACGTGATCCG 2064
Query 42543 TGAGTACGGACTTGACCCCGAAGCGATCTCCGAGGCGCTGCAACGCTCCATCGGGTGCGA 42602
|||| |||||| |||||| |||||||||| || || ||| |||| || |||
Sbjct 2063 CGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTCACCCGCGCCATGGGCGTCGA 2004
Query 42603 GCGCATCGAAGCATCCGGCGAGGGGTGGGTGTTCGTCAACAACGACTGCGTACTCGAAAC 42662
|||| ||||||||||||| || ||| | ||| |||||||||||| |||| ||
Sbjct 2003 GCGCGTCGAAGCATCCGGGCCCGGCTGGACGCTCGCGCTCAACGACTGCGTGATCGAGAC 1944
Query 42663 C---GAGAGAATGGCAGACGATTCGGTGGATCTGATTGTCACCAGTATTCCGTTCTCCAA 42719
| || ||||| || || || || ||||| ||||| || |||||||| ||
Sbjct 1943 CCGCGACCACATGGCCACGGACTCCGTCGACCTGATCGTCACGTCGATCCCGTTCTCGAA 1884
Query 42720 CCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACACCGACGACAACGCGCATTT 42779
||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1883 CCACTACGAGTACACCCCCAGCTACAACGACTTCGGCCACACCGACGACAACCTGCACTT 1824
Query 42780 CTGGGCGCAGATGGACTACCTCACACCGCAGCTGCTGCGCATCCTCGCGCCCGGG-CGGA 42838
|||| |||||||||||||||||| ||| |||| ||||| | || ||| || || ||||
Sbjct 1823 CTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGCGGGTGCT-GCGTCCAGGACGGA 1765
Query 42839 TCTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGGCAACGTCACCGGCGCCGGCGTGC 42898
|||| ||||||||||| ||||| || ||| |||||||||||||||||| |||||| | |
Sbjct 1764 TCTATGCCTGCCACGTGAAGGATCGAATCCAGTTCGGCAACGTCACCGGAGCCGGCATCC 1705
Query 42899 CCACCGTGTCCCCGTTCCACGCCGAGGCGATCTTCCACGGCCGCAAACACGGCTTCGACT 42958
||||||| || |||||||||||||| ||| || ||||||| ||| || ||||||||||
Sbjct 1704 CCACCGTCTCACCGTTCCACGCCGAAGCGCTCGCGCACGGCCTCAAGCATGGCTTCGACT 1645
Query 42959 ACCTCGGCATGATCACCGTCGTAACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGC 43018
|| | ||||||||||||||| ||||| || ||||| || ||||||||||| ||||| |
Sbjct 1644 ACATGGGCATGATCACCGTCACCACCGACGTCGTGCGCGAGAACAACCAGACCTACCGCC 1585
Query 43019 TGGGCTGGTCAGAGCAGTGCAAAGACGCCACCAAGATGGGGGTCGGCTCCCCGGAATACG 43078
| |||| | ||| | |||| |||| ||| |||||||| |||||||| || || |||
Sbjct 1584 TCGGCTACGCGGAGATGCGCAAGGACGGCACGAAGATGGGCGTCGGCTCACCCGAGTACA 1525
Query 43079 TTCTGCTGTTCCA 43091
| ||||| |||||
Sbjct 1524 TCCTGCTCTTCCA 1512
Score = 170 bits (188), Expect = 7e-38
Identities = 182/237 (77%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 41538 CGGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC-ACTG- 41595
||| ||||| |||| ||||| ||||| || |||||||| | | ||| | || |
Sbjct 3194 CGGCATCTACGTCACGAACTACGAGAGCGTGCGCGACGGCCGCCTCG--CCGTCGACGGC 3137
Query 41596 TTCACGGCCGTCTCACTCGATGAGGCGAGCGTGCTGCGGTCTTTCGGGTCCAAGACCTAC 41655
||| || ||| ||||| ||||| ||||||||| || ||||| || |||||||||
Sbjct 3136 TTCGACGCGGTCAGCCTCGACGAGGCATCCGTGCTGCGCTCCTTCGGATCGAAGACCTAC 3077
Query 41656 CAGTCGTTCCTAGAGCTGTTCGACGCGGTGCCGTACCGGTACGTCGCCACCGCCACGCCG 41715
||| |||||| | |||||||||| | | |||||||| | ||| |||||||| ||||||
Sbjct 3076 CAGGAGTTCCTCGGCCTGTTCGACGAGATCCCGTACCGCTTCGTGGCCACCGCGACGCCG 3017
Query 41716 TCACCGAACCGGTACAAGGAGCTGATCCACTACGCGGGCTATCTCGGGGTGATGGAC 41772
||||| |||||| |||||||||||||||||||||| || | ||||| | ||||||
Sbjct 3016 TCACCCAACCGGCACAAGGAGCTGATCCACTACGCCGGGTTCCTCGGCCTCATGGAC 2960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 177379637631930
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |