Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_028910.1 Length=55617 Score E Sequences producing significant alignments: (Bits) Value seq24349 531 2e-146 >seq24349 Length=3626 Score = 531 bits (588), Expect = 2e-146 Identities = 598/793 (75%), Gaps = 13/793 (2%) Strand=Plus/Minus Query 42307 GTGATGCTCGGGCAGGGCATGAACCTGCAGCAGGCCCACACCTGTGTGTACATCGGCATC 42366 ||||||||||| ||||||||||||||||||||||| ||||| || | | ||||| || Sbjct 2299 GTGATGCTCGGCCAGGGCATGAACCTGCAGCAGGCGCACACGGCCGTCTTCGTCGGCGTC 2240 Query 42367 ACGCACAAGTTCAACGATCTGATCCAGAGCTTGCACCGGATTCAGCGGTTCGGCCAAACC 42426 || |||| |||||||| ||||||| | ||||||| || ||||| ||||| || | Sbjct 2239 ACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCATCCAGCGCTTCGGACAG-CA 2181 Query 42427 CATC-CCTGCACAGCCCATTTGATCCACTCCGAAACCGAGCGGGAAGTGGTGCGGGTCAT 42485 | | ||||| | || ||||| || ||||||||||| || | | || | || Sbjct 2180 GAGCACCTGCGACGTGCACCTGATCTACGCCGAAACCGAGTCCGA---GATCCGCGACAC 2124 Query 42486 CCGC---GAGAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCGACATCATTCA 42542 || | | ||| |||| | | ||| || | || || |||| |||| | || | Sbjct 2123 CCTCCTGGCGAAGTGGGAAGAGCACGACCAGCTCACCGACACCATGAGCGACGTGATCCG 2064 Query 42543 TGAGTACGGACTTGACCCCGAAGCGATCTCCGAGGCGCTGCAACGCTCCATCGGGTGCGA 42602 |||| |||||| |||||| |||||||||| || || ||| |||| || ||| Sbjct 2063 CGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTCACCCGCGCCATGGGCGTCGA 2004 Query 42603 GCGCATCGAAGCATCCGGCGAGGGGTGGGTGTTCGTCAACAACGACTGCGTACTCGAAAC 42662 |||| ||||||||||||| || ||| | ||| |||||||||||| |||| || Sbjct 2003 GCGCGTCGAAGCATCCGGGCCCGGCTGGACGCTCGCGCTCAACGACTGCGTGATCGAGAC 1944 Query 42663 C---GAGAGAATGGCAGACGATTCGGTGGATCTGATTGTCACCAGTATTCCGTTCTCCAA 42719 | || ||||| || || || || ||||| ||||| || |||||||| || Sbjct 1943 CCGCGACCACATGGCCACGGACTCCGTCGACCTGATCGTCACGTCGATCCCGTTCTCGAA 1884 Query 42720 CCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACACCGACGACAACGCGCATTT 42779 ||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| || Sbjct 1883 CCACTACGAGTACACCCCCAGCTACAACGACTTCGGCCACACCGACGACAACCTGCACTT 1824 Query 42780 CTGGGCGCAGATGGACTACCTCACACCGCAGCTGCTGCGCATCCTCGCGCCCGGG-CGGA 42838 |||| |||||||||||||||||| ||| |||| ||||| | || ||| || || |||| Sbjct 1823 CTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGCGGGTGCT-GCGTCCAGGACGGA 1765 Query 42839 TCTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGGCAACGTCACCGGCGCCGGCGTGC 42898 |||| ||||||||||| ||||| || ||| |||||||||||||||||| |||||| | | Sbjct 1764 TCTATGCCTGCCACGTGAAGGATCGAATCCAGTTCGGCAACGTCACCGGAGCCGGCATCC 1705 Query 42899 CCACCGTGTCCCCGTTCCACGCCGAGGCGATCTTCCACGGCCGCAAACACGGCTTCGACT 42958 ||||||| || |||||||||||||| ||| || ||||||| ||| || |||||||||| Sbjct 1704 CCACCGTCTCACCGTTCCACGCCGAAGCGCTCGCGCACGGCCTCAAGCATGGCTTCGACT 1645 Query 42959 ACCTCGGCATGATCACCGTCGTAACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGC 43018 || | ||||||||||||||| ||||| || ||||| || ||||||||||| ||||| | Sbjct 1644 ACATGGGCATGATCACCGTCACCACCGACGTCGTGCGCGAGAACAACCAGACCTACCGCC 1585 Query 43019 TGGGCTGGTCAGAGCAGTGCAAAGACGCCACCAAGATGGGGGTCGGCTCCCCGGAATACG 43078 | |||| | ||| | |||| |||| ||| |||||||| |||||||| || || ||| Sbjct 1584 TCGGCTACGCGGAGATGCGCAAGGACGGCACGAAGATGGGCGTCGGCTCACCCGAGTACA 1525 Query 43079 TTCTGCTGTTCCA 43091 | ||||| ||||| Sbjct 1524 TCCTGCTCTTCCA 1512 Score = 170 bits (188), Expect = 7e-38 Identities = 182/237 (77%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 41538 CGGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC-ACTG- 41595 ||| ||||| |||| ||||| ||||| || |||||||| | | ||| | || | Sbjct 3194 CGGCATCTACGTCACGAACTACGAGAGCGTGCGCGACGGCCGCCTCG--CCGTCGACGGC 3137 Query 41596 TTCACGGCCGTCTCACTCGATGAGGCGAGCGTGCTGCGGTCTTTCGGGTCCAAGACCTAC 41655 ||| || ||| ||||| ||||| ||||||||| || ||||| || ||||||||| Sbjct 3136 TTCGACGCGGTCAGCCTCGACGAGGCATCCGTGCTGCGCTCCTTCGGATCGAAGACCTAC 3077 Query 41656 CAGTCGTTCCTAGAGCTGTTCGACGCGGTGCCGTACCGGTACGTCGCCACCGCCACGCCG 41715 ||| |||||| | |||||||||| | | |||||||| | ||| |||||||| |||||| Sbjct 3076 CAGGAGTTCCTCGGCCTGTTCGACGAGATCCCGTACCGCTTCGTGGCCACCGCGACGCCG 3017 Query 41716 TCACCGAACCGGTACAAGGAGCTGATCCACTACGCGGGCTATCTCGGGGTGATGGAC 41772 ||||| |||||| |||||||||||||||||||||| || | ||||| | |||||| Sbjct 3016 TCACCCAACCGGCACAAGGAGCTGATCCACTACGCCGGGTTCCTCGGCCTCATGGAC 2960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 177379637631930