Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_028946.1 Length=59652 Score E Sequences producing significant alignments: (Bits) Value seq24349 527 2e-145 seq73813 95.1 5e-15 >seq24349 Length=3626 Score = 527 bits (584), Expect = 2e-145 Identities = 597/794 (75%), Gaps = 11/794 (1%) Strand=Plus/Minus Query 45236 GTGATGCTCGGGCAAGGCATGAACCTGCAGCAGGCCCACACCTGTGTGTACATCGGCATC 45295 ||||||||||| || |||||||||||||||||||| ||||| || | | ||||| || Sbjct 2299 GTGATGCTCGGCCAGGGCATGAACCTGCAGCAGGCGCACACGGCCGTCTTCGTCGGCGTC 2240 Query 45296 ACGCACAAGTTCAACGATCTAATCCAGAGCTTGCACCGGATTCAGCGGTTCGGCCAAACC 45355 || |||| |||||||| |||||| | ||||||| || ||||| ||||| || | Sbjct 2239 ACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCATCCAGCGCTTCGGACAG-CA 2181 Query 45356 CATC-CCTGCAAAGCCCATTTGATCCACTCCGAAACCGAGCGGGAAGTGGTGCGGGTCAT 45414 | | ||||| | | || ||||| || ||||||||||| || | | || | || Sbjct 2180 GAGCACCTGCGACGTGCACCTGATCTACGCCGAAACCGAGTCCGA---GATCCGCGACAC 2124 Query 45415 CCGC---GAGAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCGACATCATTCA 45471 || | | ||| |||| | | ||| || | || || |||| |||| | || | Sbjct 2123 CCTCCTGGCGAAGTGGGAAGAGCACGACCAGCTCACCGACACCATGAGCGACGTGATCCG 2064 Query 45472 TGAGTACGGACTTGACCCCGAAGCGATCTCCGAGGCGCTGCAACGCTCCATCGGATGTGA 45531 |||| |||||| |||||| |||||||||| || || ||| |||| || || Sbjct 2063 CGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTCACCCGCGCCATGGGCGTCGA 2004 Query 45532 GCGCATCGAAGCATCCGGTGAGGGATGGGTGTTCGCCAACAACGACTGCGTTCACGAAAC 45591 |||| ||||||||||||| || ||| | |||| |||||||||||| ||| || Sbjct 2003 GCGCGTCGAAGCATCCGGGCCCGGCTGGACGCTCGCGCTCAACGACTGCGTGATCGAGAC 1944 Query 45592 CAA-GAGCA--TGGCAGACGATTCGGTGGATCTGATTGTCACCAGCATTCCGTTCTCCAA 45648 | || || |||| || || || || ||||| ||||| || |||||||| || Sbjct 1943 CCGCGACCACATGGCCACGGACTCCGTCGACCTGATCGTCACGTCGATCCCGTTCTCGAA 1884 Query 45649 CCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACACCGACGACAACGAGCACTT 45708 ||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| Sbjct 1883 CCACTACGAGTACACCCCCAGCTACAACGACTTCGGCCACACCGACGACAACCTGCACTT 1824 Query 45709 CTGGCAGCAGATGGACTACCTCACACCGCAGCTGCTGCGCATCCTCTCGCCGGGCCGTAT 45768 |||||||||||||||||||||||| ||| |||| ||||| | || || || || || Sbjct 1823 CTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGCGGGTGCTGCGTCCAGGACGGAT 1764 Query 45769 CTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGGAAACGTCACCGGCGCCGGCGTGCC 45828 ||| ||||||||||| ||||| || ||| |||||| ||||||||||| |||||| | || Sbjct 1763 CTATGCCTGCCACGTGAAGGATCGAATCCAGTTCGGCAACGTCACCGGAGCCGGCATCCC 1704 Query 45829 CACGGTGTCCCCGTTCCACGCCGAGGCGATCTTCCACGGACGCAAACACGGCTTCGACTA 45888 ||| || || |||||||||||||| ||| || ||||| | ||| || ||||||||||| Sbjct 1703 CACCGTCTCACCGTTCCACGCCGAAGCGCTCGCGCACGGCCTCAAGCATGGCTTCGACTA 1644 Query 45889 CCTCGGCATGATCACCGTCGTCACCGATGTGGTCCGGGAAAACAACCAGACGTACCGGCT 45948 | | ||||||||||||||| |||||| || || || || ||||||||||| ||||| || Sbjct 1643 CATGGGCATGATCACCGTCACCACCGACGTCGTGCGCGAGAACAACCAGACCTACCGCCT 1584 Query 45949 GGGCTGGTCCGAGCAGTGCAAAGACGCCACCAAGATGGGCGTCGGCTCCCCGGAATACAT 46008 |||| | ||| | |||| |||| ||| ||||||||||||||||| || || ||||| Sbjct 1583 CGGCTACGCGGAGATGCGCAAGGACGGCACGAAGATGGGCGTCGGCTCACCCGAGTACAT 1524 Query 46009 TCTGCTGTTCCACA 46022 ||||| ||||||| Sbjct 1523 CCTGCTCTTCCACA 1510 Score = 143 bits (158), Expect = 1e-29 Identities = 176/237 (74%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 44467 CGGAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAAAGTTGGACCCGAC-ACTG- 44524 ||| ||||| |||| ||||| ||||| || |||||||| | | ||| | || | Sbjct 3194 CGGCATCTACGTCACGAACTACGAGAGCGTGCGCGACGGCCGCCTCG--CCGTCGACGGC 3137 Query 44525 TTCACGGCCGTTTCACTCGACGAAGCGAGCGTGCTGCGCTCGTTCGGGTCTAAGACGTAC 44584 ||| || || |||||||| || |||||||||||| ||||| || ||||| ||| Sbjct 3136 TTCGACGCGGTCAGCCTCGACGAGGCATCCGTGCTGCGCTCCTTCGGATCGAAGACCTAC 3077 Query 44585 CAGTCGTTCCTGGAGCTGTTCGACGCGGTGCCCTACCGGTACGTCGCGACGGCCACGCCA 44644 ||| |||||| | |||||||||| | | || ||||| | ||| || || || ||||| Sbjct 3076 CAGGAGTTCCTCGGCCTGTTCGACGAGATCCCGTACCGCTTCGTGGCCACCGCGACGCCG 3017 Query 44645 TCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGTTATCTCGGGGTGATGGAC 44701 || || |||||| |||||||||||||||||||||| || | ||||| | |||||| Sbjct 3016 TCACCCAACCGGCACAAGGAGCTGATCCACTACGCCGGGTTCCTCGGCCTCATGGAC 2960 >seq73813 Length=1303 Score = 95.1 bits (104), Expect = 5e-15 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 35136 GTTGCCAAGGACGTGTGCGAGGCCGCCGGTATCTCGAAGTACCGGGACGCGATCGTTCAG 35195 || || ||||| |||||||| | ||| ||| | ||||| || ||||| ||| ||| Sbjct 177 GTCGCGAAGGATGTGTGCGATGTACTCGGCATCGCCAAGTATCGCGACGCCTTCGCGCAG 118 Query 35196 TTGGACGACGACGAAAGGGTGTACCTGTTCGTGGACACCCCTGGTGGTCCTCAGCGGATG 35255 | |||| ||||||||||| || | | ||||||||||| ||| || | |||| |||| Sbjct 117 CTCGACGCCGACGAAAGGGCGTCCGCGCCCGTGGACACCCTTGGCGGACGACAGCTGATG 58 Query 35256 GTCGCGGTCACTGAGGCTGGTGTGTGGTCGCTGTTGATGATCAGCCGGTCTCCGAAG 35312 | |||| ||| | ||||||| ||||| || | ||||| || || |||||| Sbjct 57 ACGGTCGTCAGCGAGCCCGGTGTGTTCGCGCTGATGCTCATCAGTCGATCGCCGAAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190257286345380