Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_028976.1
Length=50113
Score E
Sequences producing significant alignments: (Bits) Value
seq26502 288 3e-73
>seq26502
Length=2726
Score = 288 bits (318), Expect = 3e-73
Identities = 363/490 (74%), Gaps = 13/490 (3%)
Strand=Plus/Minus
Query 38896 GAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCATCCAGCGGGATGTTCTC 38955
|||||||||||| | ||||||||| ||||| |||||||| || || || || |||
Sbjct 2297 GAGCGTGTCGCCGCGGGCCAGCAGTTCGTAGACGGCGGGGTCGTCGAGACCGAGGTGCTC 2238
Query 38956 GATGTCGACGTGCTCACCACGGTTGCGGCGGATGTTCTCGACCGCGTCGCCCATGATCGT 39015
|| |||| | ||| || ||||| ||||||||| |||| |||||| ||||||||
Sbjct 2237 GAGATCGAGCTCCTCGCCCCGGTTCATGCGGATGTTGTCGAGCGCGTCCGAGATGATCGT 2178
Query 39016 GAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTA 39075
|||||||||||| || |||||||||||||| | ||| || || | |||||| ||| ||
Sbjct 2177 GAGGTTCCGGAGGCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCACGACGGATA 2118
Query 39076 GTCGAACTGCGTGATCGTTACG-CCGTCC-GCAGGCCGCACCCACG-TCGGGATGTGATC 39132
|||||||||||||| || | | |||||| || || || || | |||||||| ||
Sbjct 2117 GTCGAACTGCGTGA-CGATCTGACCGTCCTGCTCGC--GACGCATGATCGGGATGATGTC 2061
Query 39133 GACCAGCGGCTCGTCGGACATGATCACACCGGCTGCGTGCACGCCCATCTGCCGGACGAG 39192
|| ||| |||||| |||||||| || ||||| |||||||||||| |||||| ||
Sbjct 2060 GAGCAGGGGCTCGGACGACATGATGACGCCGGCGGCGTGCACGCCCCACTGCCGCTTCAG 2001
Query 39193 ACCTTCGAGGCCACGCGCGAGGTCAATGACCTCCTTCGCGTCCTTGTCGTTCTCGTACAG 39252
|| |||||||| ||||| |||| | |||| |||||| || |||| ||||| ||
Sbjct 2000 CCCCTCGAGGCCGAGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGGTCGGTCTCGATGAG 1941
Query 39253 CGCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGGTGATGCCCTCCAG 39312
||||||| ||||| |||||| | ||||||||||||| | | || | ||||| || ||
Sbjct 1940 AGCCCGGAACTCGCTCGCCTCCTTGTAGCGCGGGTGCGCGGAGTCGAACATGCCGTCGAG 1881
Query 39313 GGGCATCGACGCGCCCATCACATCGGCCGGG---TACGCCTTGGTCAGCTTCTCGCCGA- 39368
|||||| | ||||| | |||||||| ||||||||| ||| ||| || |
Sbjct 1880 GGGCATGTCCTTCCCCATGA---CGGCCGGGGGCATCGCCTTGGTGAGCCGCTCTCCCAT 1824
Query 39369 CCTGAAAGGG 39378
||||| |||
Sbjct 1823 GCTGAACGGG 1814
Score = 174 bits (192), Expect = 5e-39
Identities = 160/200 (80%), Gaps = 12/200 (6%)
Strand=Plus/Minus
Query 38544 CGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTG---CCCATGGCGCGACGGAGAAGGT 38600
|| ||| |||| ||||| |||| ||||||||| ||||| || || || || | ||
Sbjct 2718 CGTACTGCTTGTCCAGC---TCGGACTTCTTCTTCTTTCCCATCGCTCGGCGCAGGATGT 2662
Query 38601 CGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGC---CGCCTTCTGCACCTGCTCCT 38657
| |||||||||||| || ||||||||| ||||||| |||| | ||||||||||
Sbjct 2661 CAGCCTGACCGAGGCTGAACCCGGCCACCTTCTGCGCGATCGCCATG---ACCTGCTCCT 2605
Query 38658 GGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGG 38717
||||||||||||||||| ||| | |||||||||||||| ||||||||| ||| |||||
Sbjct 2604 GGTAGATGATGAGCCCGTAGGACTCCTCCAGGATCTCGGCGAGCGGCTCCGCCAGCTCGG 2545
Query 38718 GGTGGATCGGCGTGATCTCC 38737
|||||||||| |||||||||
Sbjct 2544 GGTGGATCGGGGTGATCTCC 2525
Score = 172 bits (190), Expect = 2e-38
Identities = 315/450 (70%), Gaps = 11/450 (2%)
Strand=Plus/Minus
Query 40057 CTGGACGCACAGCAGGGCGTCGTGGGCCGCAGCCTCCTCGACCCGCGTGTAGTGCGAGTC 40116
||| |||||||||||||| ||||||| | ||||| | | ||||||||||||||
Sbjct 973 CTGCACGCACAGCAGGGCCGCGTGGGCGTCGGCCTCGTGCTGGTGGGTGTAGTGCGAGTC 914
Query 40117 GTTGGTGACCACCGGGGTGAGACCGAGGCGCTGACCGAGGCGGTAGAGGTC-GTCGCGGA 40175
|||||| |||| | | || |||||| | |||| || || || ||| | |
Sbjct 913 GTTGGTCGCCACGAGCGGGATGCCGAGGTCTTTCGCGAGACGCAGCAGATCCGTCATG-A 855
Query 40176 CGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGAAGTTGTCCTTCCCGA 40235
| || ||||||||| ||||||||||||||||||||| |||| |||| ||||| ||||
Sbjct 854 CCCGGCGCTCGATCGACAGGCCGTGGTCCATGATCTCGGCGAAGTAGTTCTCCTTGCCGA 795
Query 40236 AGATCTCCCGCCACTTCGCAGCCTCGGCGACGGCCTCCTCGTACTGACCGAGGTTGAGCC 40295
|||| ||| | ||| ||| || | ||| ||| | |||||||| ||||| ||||
Sbjct 794 AGATGTCCTGGAACTCCGCTGCGGCCGCGCGGGCGGCGTCGTACTGGCCGAGCCGCAGCC 735
Query 40296 GGGTCATCACAGCACCACCGGGGCATCCCGTGGTGCCGATCAGGCCCTCTGCGTGC-TCG 40354
| ||| ||| | || ||||| ||||| ||| |||| || |||| ||| | ||
Sbjct 734 GCGTCTGCACCTCTCCGGACGGGCACCCCGTCGTGGCGATGAGCCCCTTGCCGTACGTCT 675
Query 40355 GCCACCAGCTCGGCGTCCATGCGCGGGTACTTCCCG-AGCAGACCCTCGCTGTACGAGCG 40413
| | ||||||| |||||| ||||| ||| | || | ||||| || ||| |
Sbjct 674 G-GAGCAGCTCGCGGTCCATACGCGG---CTTGAAGTAGTA-CCCCTCCATGCTCGACAG 620
Query 40414 AGAGGAGAGCTTGAACAGGTTGTGCAGGCCGGTCTTGTTC-GTCGCGAGCATGGTCATGT 40472
||| ||| ||| |||||||||| ||| | || || | | | | |||||||||||
Sbjct 619 CGAGCTCAGCCGGAAGAGGTTGTGCATGCCCTCCGTGCTCTGGCTCCA-CATGGTCATGT 561
Query 40473 GGGTGTAGGCACCCCGACCGCTCACGTCGT 40502
||||||| || ||| ||| ||||||||
Sbjct 560 GGGTGTACGCGCCCGAACCCGACACGTCGT 531
Score = 143 bits (158), Expect = 9e-30
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 39507 GGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCT 39566
|||| |||||||||| ||| | ||||||||| || ||||| || ||||| ||||||||||
Sbjct 1622 GGTCGTCGAAGTCGACGTCGAAGTCGGGCATCGACACGCGGTCCGGGTTGAGGAACCGCT 1563
Query 39567 CGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCA 39626
||||||| || ||||| || ||||| |||||||||||| | || || ||| |||
Sbjct 1562 CGAAGATCAGACCGTGCTCGAGAGGGTCGAGGTCGGTGATCTTCATCGCATAGGCGACCA 1503
Query 39627 GCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAG 39685
||| || || | ||||| ||||| || ||||||| | ||||| ||||| ||||||
Sbjct 1502 TCGAACCCGCACCGGAGCCGCGCCCCGGACCGACCCGGATGCCGTTGTCCTTGGCCCAG 1444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 159813695000250
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