Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq26502 288 3e-73 >seq26502 Length=2726 Score = 288 bits (318), Expect = 3e-73 Identities = 363/490 (74%), Gaps = 13/490 (3%) Strand=Plus/Minus Query 38896 GAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCATCCAGCGGGATGTTCTC 38955 |||||||||||| | ||||||||| ||||| |||||||| || || || || ||| Sbjct 2297 GAGCGTGTCGCCGCGGGCCAGCAGTTCGTAGACGGCGGGGTCGTCGAGACCGAGGTGCTC 2238 Query 38956 GATGTCGACGTGCTCACCACGGTTGCGGCGGATGTTCTCGACCGCGTCGCCCATGATCGT 39015 || |||| | ||| || ||||| ||||||||| |||| |||||| |||||||| Sbjct 2237 GAGATCGAGCTCCTCGCCCCGGTTCATGCGGATGTTGTCGAGCGCGTCCGAGATGATCGT 2178 Query 39016 GAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTA 39075 |||||||||||| || |||||||||||||| | ||| || || | |||||| ||| || Sbjct 2177 GAGGTTCCGGAGGCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCACGACGGATA 2118 Query 39076 GTCGAACTGCGTGATCGTTACG-CCGTCC-GCAGGCCGCACCCACG-TCGGGATGTGATC 39132 |||||||||||||| || | | |||||| || || || || | |||||||| || Sbjct 2117 GTCGAACTGCGTGA-CGATCTGACCGTCCTGCTCGC--GACGCATGATCGGGATGATGTC 2061 Query 39133 GACCAGCGGCTCGTCGGACATGATCACACCGGCTGCGTGCACGCCCATCTGCCGGACGAG 39192 || ||| |||||| |||||||| || ||||| |||||||||||| |||||| || Sbjct 2060 GAGCAGGGGCTCGGACGACATGATGACGCCGGCGGCGTGCACGCCCCACTGCCGCTTCAG 2001 Query 39193 ACCTTCGAGGCCACGCGCGAGGTCAATGACCTCCTTCGCGTCCTTGTCGTTCTCGTACAG 39252 || |||||||| ||||| |||| | |||| |||||| || |||| ||||| || Sbjct 2000 CCCCTCGAGGCCGAGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGGTCGGTCTCGATGAG 1941 Query 39253 CGCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGGTGATGCCCTCCAG 39312 ||||||| ||||| |||||| | ||||||||||||| | | || | ||||| || || Sbjct 1940 AGCCCGGAACTCGCTCGCCTCCTTGTAGCGCGGGTGCGCGGAGTCGAACATGCCGTCGAG 1881 Query 39313 GGGCATCGACGCGCCCATCACATCGGCCGGG---TACGCCTTGGTCAGCTTCTCGCCGA- 39368 |||||| | ||||| | |||||||| ||||||||| ||| ||| || | Sbjct 1880 GGGCATGTCCTTCCCCATGA---CGGCCGGGGGCATCGCCTTGGTGAGCCGCTCTCCCAT 1824 Query 39369 CCTGAAAGGG 39378 ||||| ||| Sbjct 1823 GCTGAACGGG 1814 Score = 174 bits (192), Expect = 5e-39 Identities = 160/200 (80%), Gaps = 12/200 (6%) Strand=Plus/Minus Query 38544 CGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTG---CCCATGGCGCGACGGAGAAGGT 38600 || ||| |||| ||||| |||| ||||||||| ||||| || || || || | || Sbjct 2718 CGTACTGCTTGTCCAGC---TCGGACTTCTTCTTCTTTCCCATCGCTCGGCGCAGGATGT 2662 Query 38601 CGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGC---CGCCTTCTGCACCTGCTCCT 38657 | |||||||||||| || ||||||||| ||||||| |||| | |||||||||| Sbjct 2661 CAGCCTGACCGAGGCTGAACCCGGCCACCTTCTGCGCGATCGCCATG---ACCTGCTCCT 2605 Query 38658 GGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGG 38717 ||||||||||||||||| ||| | |||||||||||||| ||||||||| ||| ||||| Sbjct 2604 GGTAGATGATGAGCCCGTAGGACTCCTCCAGGATCTCGGCGAGCGGCTCCGCCAGCTCGG 2545 Query 38718 GGTGGATCGGCGTGATCTCC 38737 |||||||||| ||||||||| Sbjct 2544 GGTGGATCGGGGTGATCTCC 2525 Score = 172 bits (190), Expect = 2e-38 Identities = 315/450 (70%), Gaps = 11/450 (2%) Strand=Plus/Minus Query 40057 CTGGACGCACAGCAGGGCGTCGTGGGCCGCAGCCTCCTCGACCCGCGTGTAGTGCGAGTC 40116 ||| |||||||||||||| ||||||| | ||||| | | |||||||||||||| Sbjct 973 CTGCACGCACAGCAGGGCCGCGTGGGCGTCGGCCTCGTGCTGGTGGGTGTAGTGCGAGTC 914 Query 40117 GTTGGTGACCACCGGGGTGAGACCGAGGCGCTGACCGAGGCGGTAGAGGTC-GTCGCGGA 40175 |||||| |||| | | || |||||| | |||| || || || ||| | | Sbjct 913 GTTGGTCGCCACGAGCGGGATGCCGAGGTCTTTCGCGAGACGCAGCAGATCCGTCATG-A 855 Query 40176 CGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGAAGTTGTCCTTCCCGA 40235 | || ||||||||| ||||||||||||||||||||| |||| |||| ||||| |||| Sbjct 854 CCCGGCGCTCGATCGACAGGCCGTGGTCCATGATCTCGGCGAAGTAGTTCTCCTTGCCGA 795 Query 40236 AGATCTCCCGCCACTTCGCAGCCTCGGCGACGGCCTCCTCGTACTGACCGAGGTTGAGCC 40295 |||| ||| | ||| ||| || | ||| ||| | |||||||| ||||| |||| Sbjct 794 AGATGTCCTGGAACTCCGCTGCGGCCGCGCGGGCGGCGTCGTACTGGCCGAGCCGCAGCC 735 Query 40296 GGGTCATCACAGCACCACCGGGGCATCCCGTGGTGCCGATCAGGCCCTCTGCGTGC-TCG 40354 | ||| ||| | || ||||| ||||| ||| |||| || |||| ||| | || Sbjct 734 GCGTCTGCACCTCTCCGGACGGGCACCCCGTCGTGGCGATGAGCCCCTTGCCGTACGTCT 675 Query 40355 GCCACCAGCTCGGCGTCCATGCGCGGGTACTTCCCG-AGCAGACCCTCGCTGTACGAGCG 40413 | | ||||||| |||||| ||||| ||| | || | ||||| || ||| | Sbjct 674 G-GAGCAGCTCGCGGTCCATACGCGG---CTTGAAGTAGTA-CCCCTCCATGCTCGACAG 620 Query 40414 AGAGGAGAGCTTGAACAGGTTGTGCAGGCCGGTCTTGTTC-GTCGCGAGCATGGTCATGT 40472 ||| ||| ||| |||||||||| ||| | || || | | | | ||||||||||| Sbjct 619 CGAGCTCAGCCGGAAGAGGTTGTGCATGCCCTCCGTGCTCTGGCTCCA-CATGGTCATGT 561 Query 40473 GGGTGTAGGCACCCCGACCGCTCACGTCGT 40502 ||||||| || ||| ||| |||||||| Sbjct 560 GGGTGTACGCGCCCGAACCCGACACGTCGT 531 Score = 143 bits (158), Expect = 9e-30 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 39507 GGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCT 39566 |||| |||||||||| ||| | ||||||||| || ||||| || ||||| |||||||||| Sbjct 1622 GGTCGTCGAAGTCGACGTCGAAGTCGGGCATCGACACGCGGTCCGGGTTGAGGAACCGCT 1563 Query 39567 CGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCA 39626 ||||||| || ||||| || ||||| |||||||||||| | || || ||| ||| Sbjct 1562 CGAAGATCAGACCGTGCTCGAGAGGGTCGAGGTCGGTGATCTTCATCGCATAGGCGACCA 1503 Query 39627 GCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAG 39685 ||| || || | ||||| ||||| || ||||||| | ||||| ||||| |||||| Sbjct 1502 TCGAACCCGCACCGGAGCCGCGCCCCGGACCGACCCGGATGCCGTTGTCCTTGGCCCAG 1444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159813695000250