Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_029044.1 Length=154434 Score E Sequences producing significant alignments: (Bits) Value seq26502 89.7 5e-13 seq115444 84.2 2e-11 >seq26502 Length=2726 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/147 (74%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 113100 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTC 113159 ||| ||||| || ||||||| | || ||| ||||| |||| | ||| |||||| Sbjct 1471 CGGTCCGGGGCGCGGCTCCGGTGCGGGTTCGATGGTCGCCTATGCGATGAAGATCACCGA 1530 Query 113160 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGC--CCC 113217 ||||||| || || ||| ||||| |||||||| || |||||||||||||| | Sbjct 1531 CCTCGACCCTCTCGAGCACGGTCTGATCTTCGAGCGGTTCCTCAACCCGGACCGCGTGTC 1590 Query 113218 GACTTCCCCGACATCGACGTCGACTTC 113244 || | |||||| |||||||||||||| Sbjct 1591 GA--TGCCCGACTTCGACGTCGACTTC 1615 >seq115444 Length=225 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 95741 ATGCGAAGGTAGCTCAGCTGGTAGAGCGCCACCTTGCCAAGGTGGAGGTCGCGGGATCGT 95800 ||||| | ||||||||||||||||||| |||||||||||||||||| |||||| | ||| Sbjct 141 ATGCGGACGTAGCTCAGCTGGTAGAGCACCACCTTGCCAAGGTGGATGTCGCGAGTTCGA 82 Query 95801 AACCCGTTCTTCGCTC 95816 | | ||| | ||||| Sbjct 81 ATCTCGTCGTCCGCTC 66 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492677213608400