Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq44648 98.7 7e-16 seq158136 89.7 4e-13 seq39107 87.8 1e-12 >seq44648 Length=6574 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||| || ||||||||||| ||| |||||| | || ||||| || | Sbjct 5310 AATGCAGATTTTTGTCAAGACTCTTACTGGAAAAACTATTACTTTGGAGGTCGAGAGTTC 5369 Query 27849 CGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| ||| ||||| || || ||| ||| ||||| || || |||| || Sbjct 5370 AGACACGATTGACAAT--GTGAAGGCAAAGATACAGGACAAGGAGGGCATTCCTCCAGAT 5427 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| |||| |||||||| ||||| || | || || | ||| | || | |||||| Sbjct 5428 CAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGACGTACTCTGGCTGATTAC 5487 Query 27967 AACATCCAAAAAGAGAGCACTTTGCAT 27993 ||||| || || ||| |||| | ||| Sbjct 5488 AACATTCAGAAGGAGTCCACTCTTCAT 5514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| || || || |||| || |||||| | Sbjct 2575 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 2634 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| || || |||| || | Sbjct 2635 GACACCATAGACAAT--GTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCACCAGACC 2692 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | || ||||| ||||| ||| | || |||| || | |||| | ||||||| Sbjct 2693 AACAGAGGCTCATCTTTGCTGGAAAGCAACTTGAAGACGGTCGAACCTTGGCTGATTACA 2752 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | || ||||| ||||| | ||||| || Sbjct 2753 ACATCCAAAAGGAGTCTACCCTACACTTGGTGCTGCGTCTTCGTGGTGG 2801 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| || || || |||| || |||||| | Sbjct 2803 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 2862 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| || || |||| || | Sbjct 2863 GACACCATAGACAAT--GTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCACCAGACC 2920 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | || ||||| ||||| ||| | || |||| || | |||| | ||||||| Sbjct 2921 AACAGAGGCTCATCTTTGCTGGAAAGCAACTTGAAGACGGTCGAACCTTGGCTGATTACA 2980 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | || ||||| ||||| | ||||| || Sbjct 2981 ACATCCAAAAGGAGTCTACCCTACACTTGGTGCTGCGTCTTCGTGGTGG 3029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| || || || |||| || |||||| | Sbjct 3259 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 3318 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| || || |||| || | Sbjct 3319 GACACCATAGACAAT--GTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCACCAGACC 3376 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | || ||||| ||||| ||| | || |||| || | |||| | ||||||| Sbjct 3377 AACAGAGGCTCATCTTTGCTGGAAAGCAACTTGAAGACGGTCGAACCTTGGCTGATTACA 3436 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | || ||||| ||||| | ||||| || Sbjct 3437 ACATCCAAAAGGAGTCTACCCTACACTTGGTGCTGCGTCTTCGTGGTGG 3485 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| || || || |||| || |||||| | Sbjct 3487 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 3546 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| || || |||| || | Sbjct 3547 GACACCATAGACAAT--GTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCACCAGACC 3604 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | || ||||| ||||| ||| | || |||| || | |||| | ||||||| Sbjct 3605 AACAGAGGCTCATCTTTGCTGGAAAGCAACTTGAAGACGGTCGAACCTTGGCTGATTACA 3664 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | || ||||| ||||| | ||||| || Sbjct 3665 ACATCCAAAAGGAGTCTACCCTACACTTGGTGCTGCGTCTTCGTGGTGG 3713 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| || || || |||| || |||||| | Sbjct 3715 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 3774 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| || || |||| || | Sbjct 3775 GACACCATAGACAAT--GTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCACCAGACC 3832 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | || ||||| ||||| ||| | || |||| || | |||| | ||||||| Sbjct 3833 AACAGAGGCTCATCTTTGCTGGAAAGCAACTTGAAGACGGTCGAACCTTGGCTGATTACA 3892 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | || ||||| ||||| | ||||| || Sbjct 3893 ACATCCAAAAGGAGTCTACCCTACACTTGGTGCTGCGTCTTCGTGGTGG 3941 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| || || || |||| || |||||| | Sbjct 4171 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 4230 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| || || |||| || | Sbjct 4231 GACACCATAGACAAT--GTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCACCAGACC 4288 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | || ||||| ||||| ||| | || |||| || | |||| | ||||||| Sbjct 4289 AACAGAGGCTCATCTTTGCTGGAAAGCAACTTGAAGACGGTCGAACCTTGGCTGATTACA 4348 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | || ||||| ||||| | ||||| || Sbjct 4349 ACATCCAAAAGGAGTCTACCCTACACTTGGTGCTGCGTCTTCGTGGTGG 4397 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| || || || |||| || |||||| | Sbjct 4399 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 4458 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| || || |||| || | Sbjct 4459 GACACCATAGACAAT--GTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCACCAGACC 4516 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | || ||||| ||||| ||| | || |||| || | |||| | ||||||| Sbjct 4517 AACAGAGGCTCATCTTTGCTGGAAAGCAACTTGAAGACGGTCGAACCTTGGCTGATTACA 4576 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | || ||||| ||||| | ||||| || Sbjct 4577 ACATCCAAAAGGAGTCTACCCTACACTTGGTGCTGCGTCTTCGTGGTGG 4625 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| || || || |||| || |||||| | Sbjct 4627 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 4686 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| || || |||| || | Sbjct 4687 GACACCATAGACAAT--GTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCACCAGACC 4744 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | || ||||| ||||| ||| | || |||| || | |||| | ||||||| Sbjct 4745 AACAGAGGCTCATCTTTGCTGGAAAGCAACTTGAAGACGGTCGAACCTTGGCTGATTACA 4804 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | || ||||| ||||| | ||||| || Sbjct 4805 ACATCCAAAAGGAGTCTACCCTACACTTGGTGCTGCGTCTTCGTGGTGG 4853 >seq158136 Length=352 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| |||||||| || | || || || || || |||| || |||||| | Sbjct 20 AATGCAAATCTTTGTGAAGACATTGACGGGAAAGACAATCACTCTTGAAGTGGAAAGCTC 79 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || ||||| ||||| || || |||||||| ||| | || || Sbjct 80 TGACACCATTGACAAT--GTCAAGGCTAAGATTCAGGACAAAGAGGGTATCCCACCAGAC 137 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| || | |||||||| |||||||| | || || | || | | | |||||||| Sbjct 138 CAGCAAAGGCTCATTTTTGCTGGAAAACAGCTTGAGGATGGCCGAACCCTTGCCGATTAC 197 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || |||||| || |||||||||| | ||| | ||||| || Sbjct 198 AACATTCAGAAAGAGTCTACCCTGCATTTGGTGCTTCGTCTCCGTGGTGG 247 >seq39107 Length=55737 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||||| || || ||| |||||| | || || ||||| | Sbjct 16779 ATGCAAATTTTTGTCAAGACTCTGACGGGAAAAACTATTACTTTGGAGGTTGAAAGTTCT 16838 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || ||| ||| |||||||| ||| |||| || | Sbjct 16839 GATACCATTGACAAT--GTAAAGGCAAAGATACAGGACAAAGAGGGTATTCCACCAGACC 16896 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 ||||| || | || ||||| || || || |||| || | || | |||| | ||||| Sbjct 16897 AGCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACACTTG-CTGATTAT 16955 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 |||||||| || || |||| | |||||||| || Sbjct 16956 AACATCCAGAAGGAATCCACTCTTCATTTGGTGTT 16990 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||||| || || ||| |||||| | || || ||||| | Sbjct 26553 ATGCAAATTTTTGTCAAGACTCTGACGGGAAAAACTATTACTTTGGAGGTTGAAAGTTCT 26612 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || ||| ||| |||||||| ||| |||| || | Sbjct 26613 GATACCATTGACAAT--GTAAAGGCAAAGATACAGGACAAAGAGGGTATTCCACCAGACC 26670 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||| || || || |||| || | || | | | | ||||| | Sbjct 26671 AGCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATA 26730 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || ||| |||| |||| ||| | | ||||| || Sbjct 26731 ACATCCAGAAGGAATCTACTCTGCACCTGGTGTTGAGGCTTCGTGGTGG 26779 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||||| || || ||| |||||| | || || ||||| | Sbjct 41390 ATGCAAATTTTTGTCAAGACTCTGACGGGAAAAACTATTACTTTGGAGGTTGAAAGTTCT 41449 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || ||| ||| |||||||| ||| |||| || | Sbjct 41450 GATACCATTGACAAT--GTAAAGGCAAAGATACAGGACAAAGAGGGTATTCCACCAGACC 41507 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||| || || || |||| || | || | | | | ||||| | Sbjct 41508 AGCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATA 41567 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || ||| |||| |||| ||| | | ||||| || Sbjct 41568 ACATCCAGAAGGAATCTACTCTGCACCTGGTGTTGAGGCTTCGTGGTGG 41616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354890743850445