Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq24349 289 9e-74 seq61441 111 5e-20 >seq24349 Length=3626 Score = 289 bits (320), Expect = 9e-74 Identities = 529/760 (70%), Gaps = 25/760 (3%) Strand=Plus/Minus Query 1201 GGCCATCTACCTGGGCATCGGCTTCAAGTTCAACGACTTCATCCAGTCCATTCACCGCCT 1260 |||| ||| | | ||| || || ||| ||||||||| |||||| || | |||||| | Sbjct 2258 GGCCGTCTTCGTCGGCGTCACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCAT 2199 Query 1261 GCACCGATTCCTGCAGACCGGCCGCGTGCG-CATCGACCTGATCTATACCGAGGCCGAGC 1319 || || ||| ||| | | | | |||| | | |||||||||| |||| ||||| Sbjct 2198 CCAGCGCTTCGGACAG-CAGAGCACCTGCGACGTGCACCTGATCTACGCCGAAACCGAGT 2140 Query 1320 GCGACATCCGCCGCCAACTCGAACGGAAGTGGCAGCAGCACAACACCATGGTTCAGCG-- 1377 ||| |||||| | ||| ||||||| | ||||| || || | ||| || Sbjct 2139 CCGAGATCCGCGACACCCTCCTGGCGAAGTGGGAAGAGCACGAC--CA--GCTCACCGAC 2084 Query 1378 --CATGACCGAGATCATCAAGCAGTACGGCCTGTCCGTGGCCGCCATGGCACAGACCCTC 1435 ||||| ||| | ||| ||| ||| || | ||||| || | | ||| Sbjct 2083 ACCATGAGCGACGTGATCCGCGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTC 2024 Query 1436 ACCCGCTCCATGGGCGTGGAGCGCGTCGAG--ATCAAGGGCAAGGACTACACCATCGTCA 1493 |||||| |||||||||| ||||||||||| ||| |||| || || || ||| Sbjct 2023 ACCCGCGCCATGGGCGTCGAGCGCGTCGAAGCATCC-GGGCCCGG-CTGGACGCTCGCGC 1966 Query 1494 ACAACGACACCGTGCTCGAAACCCGC---CGCATGGAAAGCAACAGCGTCGGCTTGACCA 1550 ||||||| |||| |||| |||||| | ||||| | || ||||| | ||| | Sbjct 1965 TCAACGACTGCGTGATCGAGACCCGCGACCACATGGCCACGGACTCCGTCGACCTGATCG 1906 Query 1551 TCACCAGCATCCCCTTCAGCACCCAGTACGAGTACTCGCCGAACTACGCCGACTTCGGCC 1610 |||| ||||| ||| | ||| ||||||||| | || | |||| ||||||||||| Sbjct 1905 TCACGTCGATCCCGTTCTCGAACCACTACGAGTACACCCCCAGCTACAACGACTTCGGCC 1846 Query 1611 ACACCGACGACAACGCGCACTTCTTCGAGCAGATGGACTATCTGATCCCGGAACTGCTGC 1670 |||||||||||||| |||||||| ||||||||||||| || | ||||| || |||| Sbjct 1845 ACACCGACGACAACCTGCACTTCTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGC 1786 Query 1671 GCGTGACCATCCCCGGGCG--TCTG-GCCTGCATCCACGTGAAGGATCGCATCATTCCCG 1727 | ||| || || || ||| |||||| |||||||||||||| ||| || Sbjct 1785 GGGTGCTGCGTCCAGGACGGATCTATGCCTGC---CACGTGAAGGATCGAATCCAGTTCG 1729 Query 1728 GCGGAATGACCGGCCTTGGCTTCCAGACCGTCTACCCCTTCCACATGGAAGTGACTCGAG 1787 || | ||||| ||| ||| ||||||| || |||||| |||| | |||| | Sbjct 1728 GCAACGTCACCGGAGCCGGCATCCCCACCGTCTCACCGTTCCACGCCGAAGCG-CTCGCG 1670 Query 1788 C-CTTCGTCAAGCATGGCTGGGCCTATATGGGCATGAAGACCATCGTCACCGACGTGGTT 1846 | | | |||||||||||| | ||| |||||||||| ||| || ||||||||| || Sbjct 1669 CACGGCCTCAAGCATGGCTTCGACTACATGGGCATGATCACCGTCACCACCGACGTCGTG 1610 Query 1847 CGCGAGAACGCCCAGACCTACCGCCTTTCGTGGACGGAGCAGTGCAAGGACGGCACCAAG 1906 ||||||||| ||||||||||||||| | ||||| | ||||||||||||| ||| Sbjct 1609 CGCGAGAACAACCAGACCTACCGCCTCGGCTACGCGGAGATGCGCAAGGACGGCACGAAG 1550 Query 1907 ATGGGTGTCGGCATGCCCGAGTACTTGCTGATCTTCCGCA 1946 ||||| |||||| ||||||||| | ||| |||||| || Sbjct 1549 ATGGGCGTCGGCTCACCCGAGTACATCCTGCTCTTCCACA 1510 >seq61441 Length=859 Score = 111 bits (122), Expect = 5e-20 Identities = 165/230 (72%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 33988 CCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTGA 34047 ||||| || ||||| || | ||| | || ||| ||||| | || || |||| || Sbjct 776 CCGTTACGATGCTTGGCCACGATGAGGTCGGCCTCGCCGGG--AC-GGACGTCCTTGTCG 720 Query 34048 TAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGAC 34107 |||||| ||| |||| || | |||| || |||||||||||||||||||| |||||| Sbjct 719 TAGACCGAGTCGCGGTGCAGCAGGATGACCATGTCGGCGTCCTGCTCGATCGATCCGGAC 660 Query 34108 TCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGC--GGTTGA 34165 || |||||||| ||| || ||||| | | |||||||| |||| | |||| | Sbjct 659 TCTCGCAGGTCGCTGATCGCGGGCTTCTTGTCCTGGCGCTGCTC--GGGACCACGGTTCA 602 Query 34166 GCTGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTG 34215 ||||||||||| |||| || || | |||||| |||| | |||||| Sbjct 601 GCTGCGACAGCGCGATGACCGGCACCTGCAGCTCCTTGGCGATGAGCTTG 552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160037099067150