Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_030909.1
Length=50183
Score E
Sequences producing significant alignments: (Bits) Value
seq24349 289 9e-74
seq61441 111 5e-20
>seq24349
Length=3626
Score = 289 bits (320), Expect = 9e-74
Identities = 529/760 (70%), Gaps = 25/760 (3%)
Strand=Plus/Minus
Query 1201 GGCCATCTACCTGGGCATCGGCTTCAAGTTCAACGACTTCATCCAGTCCATTCACCGCCT 1260
|||| ||| | | ||| || || ||| ||||||||| |||||| || | |||||| |
Sbjct 2258 GGCCGTCTTCGTCGGCGTCACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCAT 2199
Query 1261 GCACCGATTCCTGCAGACCGGCCGCGTGCG-CATCGACCTGATCTATACCGAGGCCGAGC 1319
|| || ||| ||| | | | | |||| | | |||||||||| |||| |||||
Sbjct 2198 CCAGCGCTTCGGACAG-CAGAGCACCTGCGACGTGCACCTGATCTACGCCGAAACCGAGT 2140
Query 1320 GCGACATCCGCCGCCAACTCGAACGGAAGTGGCAGCAGCACAACACCATGGTTCAGCG-- 1377
||| |||||| | ||| ||||||| | ||||| || || | ||| ||
Sbjct 2139 CCGAGATCCGCGACACCCTCCTGGCGAAGTGGGAAGAGCACGAC--CA--GCTCACCGAC 2084
Query 1378 --CATGACCGAGATCATCAAGCAGTACGGCCTGTCCGTGGCCGCCATGGCACAGACCCTC 1435
||||| ||| | ||| ||| ||| || | ||||| || | | |||
Sbjct 2083 ACCATGAGCGACGTGATCCGCGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTC 2024
Query 1436 ACCCGCTCCATGGGCGTGGAGCGCGTCGAG--ATCAAGGGCAAGGACTACACCATCGTCA 1493
|||||| |||||||||| ||||||||||| ||| |||| || || || |||
Sbjct 2023 ACCCGCGCCATGGGCGTCGAGCGCGTCGAAGCATCC-GGGCCCGG-CTGGACGCTCGCGC 1966
Query 1494 ACAACGACACCGTGCTCGAAACCCGC---CGCATGGAAAGCAACAGCGTCGGCTTGACCA 1550
||||||| |||| |||| |||||| | ||||| | || ||||| | ||| |
Sbjct 1965 TCAACGACTGCGTGATCGAGACCCGCGACCACATGGCCACGGACTCCGTCGACCTGATCG 1906
Query 1551 TCACCAGCATCCCCTTCAGCACCCAGTACGAGTACTCGCCGAACTACGCCGACTTCGGCC 1610
|||| ||||| ||| | ||| ||||||||| | || | |||| |||||||||||
Sbjct 1905 TCACGTCGATCCCGTTCTCGAACCACTACGAGTACACCCCCAGCTACAACGACTTCGGCC 1846
Query 1611 ACACCGACGACAACGCGCACTTCTTCGAGCAGATGGACTATCTGATCCCGGAACTGCTGC 1670
|||||||||||||| |||||||| ||||||||||||| || | ||||| || ||||
Sbjct 1845 ACACCGACGACAACCTGCACTTCTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGC 1786
Query 1671 GCGTGACCATCCCCGGGCG--TCTG-GCCTGCATCCACGTGAAGGATCGCATCATTCCCG 1727
| ||| || || || ||| |||||| |||||||||||||| ||| ||
Sbjct 1785 GGGTGCTGCGTCCAGGACGGATCTATGCCTGC---CACGTGAAGGATCGAATCCAGTTCG 1729
Query 1728 GCGGAATGACCGGCCTTGGCTTCCAGACCGTCTACCCCTTCCACATGGAAGTGACTCGAG 1787
|| | ||||| ||| ||| ||||||| || |||||| |||| | |||| |
Sbjct 1728 GCAACGTCACCGGAGCCGGCATCCCCACCGTCTCACCGTTCCACGCCGAAGCG-CTCGCG 1670
Query 1788 C-CTTCGTCAAGCATGGCTGGGCCTATATGGGCATGAAGACCATCGTCACCGACGTGGTT 1846
| | | |||||||||||| | ||| |||||||||| ||| || ||||||||| ||
Sbjct 1669 CACGGCCTCAAGCATGGCTTCGACTACATGGGCATGATCACCGTCACCACCGACGTCGTG 1610
Query 1847 CGCGAGAACGCCCAGACCTACCGCCTTTCGTGGACGGAGCAGTGCAAGGACGGCACCAAG 1906
||||||||| ||||||||||||||| | ||||| | ||||||||||||| |||
Sbjct 1609 CGCGAGAACAACCAGACCTACCGCCTCGGCTACGCGGAGATGCGCAAGGACGGCACGAAG 1550
Query 1907 ATGGGTGTCGGCATGCCCGAGTACTTGCTGATCTTCCGCA 1946
||||| |||||| ||||||||| | ||| |||||| ||
Sbjct 1549 ATGGGCGTCGGCTCACCCGAGTACATCCTGCTCTTCCACA 1510
>seq61441
Length=859
Score = 111 bits (122), Expect = 5e-20
Identities = 165/230 (72%), Gaps = 7/230 (3%)
Strand=Plus/Minus
Query 33988 CCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTGA 34047
||||| || ||||| || | ||| | || ||| ||||| | || || |||| ||
Sbjct 776 CCGTTACGATGCTTGGCCACGATGAGGTCGGCCTCGCCGGG--AC-GGACGTCCTTGTCG 720
Query 34048 TAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGAC 34107
|||||| ||| |||| || | |||| || |||||||||||||||||||| ||||||
Sbjct 719 TAGACCGAGTCGCGGTGCAGCAGGATGACCATGTCGGCGTCCTGCTCGATCGATCCGGAC 660
Query 34108 TCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGC--GGTTGA 34165
|| |||||||| ||| || ||||| | | |||||||| |||| | |||| |
Sbjct 659 TCTCGCAGGTCGCTGATCGCGGGCTTCTTGTCCTGGCGCTGCTC--GGGACCACGGTTCA 602
Query 34166 GCTGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTG 34215
||||||||||| |||| || || | |||||| |||| | ||||||
Sbjct 601 GCTGCGACAGCGCGATGACCGGCACCTGCAGCTCCTTGGCGATGAGCTTG 552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160037099067150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |