Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq15189 100 4e-16 seq6366 96.9 5e-15 seq88322 86.0 9e-12 >seq15189 Length=5727 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 |||||||| || || || || | |||||||| || |||||| |||| ||||||| Sbjct 2542 TCTCTTTCGTACTGAGTGTACAGTTTCTCAAATTCTTCACCCCAACAATCAGCCAAACCC 2483 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 ||| |||||| || || | ||| ||||| | |||| || ||| | || ||||||| Sbjct 2482 GGAGCTTCATTGGGGCAAAACAAAGACCATTGCCCATTGCTCTGAACTCTTTCCATAAAG 2423 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||| | ||| |||||| ||| |||||||| Sbjct 2422 AGATCAGGCACCCAAAGAGCATAAAACAGATCTCG 2388 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | || |||||||||||||||||||| || ||| | || | | Sbjct 1728 GTTCCCGCATTGAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTGAGACATCAGGTGG 1669 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||| | | | | || || || | ||||||||| ||||| || | ||||||| Sbjct 1668 TAAGTTTTGACAGCAGAGTCAATGTCTTCCTTATGAATTCCAACAGCAACCCTCATCAAC 1609 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || || |||| ||| ||| |||| | | || || | ||| || | | | Sbjct 1608 ATGTGTTGTGGTCTTTCCACAACCTTACCTTGAACCTTTAAGAGGTAGGACCTCTTAAGG 1549 Query 77174 GTTTTAAAACCAAAATA 77190 ||||| ||||||||||| Sbjct 1548 GTTTTGAAACCAAAATA 1532 >seq6366 Length=10312 Score = 96.9 bits (106), Expect = 5e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 76795 CAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGC 76854 ||||||||||| ||| || || ||||| |||||||| | | || ||||| || || Sbjct 181 CAACATTGGAAAAATACCATTTGATGTCCCATTTGTGCAACGGATGTAACTACCCGTGGC 240 Query 76855 ACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCG 76914 ||||||||| || ||| | || ||||| || || ||| || | |||||| Sbjct 241 ACGAATATTGTGAACAGAAACACCAATTCCACCAGCTGATTTGCTAATGATAGCACACTC 300 Query 76915 TTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| |||||||| || ||||||||||||||||| ||||| | ||| || || || Sbjct 301 CTTCAAAGTGTCATATATTCCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACT 360 Query 76975 A 76975 | Sbjct 361 A 361 >seq88322 Length=2502 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 |||||||||||| | ||| | | |||||||| | |||||| ||| ||||||| Sbjct 2078 TCTCTTTCATATCGATGATAAAGCTCCTCAAATTCCTGACCCCAACAATCTGCCAAACCT 2019 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 | |||||| || || | ||| ||||| | |||| || ||| | || ||||||| Sbjct 2018 CGTGCTTCATTGGGGCAAAACAAAGACCATTGTCCATTACTCTGAACTCTTTCCATAAAG 1959 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||| | ||| |||||| ||| |||||||| Sbjct 1958 AGATCAGGCACCCAAAGAGCATAAAACAGATCTCG 1924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710937871771200