Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_031074.1
Length=92580
Score E
Sequences producing significant alignments: (Bits) Value
seq375 131 1e-25
>seq375
Length=1023
Score = 131 bits (144), Expect = 1e-25
Identities = 142/186 (76%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 1151 CCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGGTGACCTCAGCGACATGGCA 1210
|| |||||||| || | || ||||| ||||| || ||| || ||||||||
Sbjct 1002 CCCGACTCGCGGCGCCTGCTCGTCTCCGCCTGGAATCCCGCGGACATCCCGGACATGGCC 943
Query 1211 CTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTGC-A 1269
|| ||||||||| |||||||| | ||||||| |||||| |||||| |||| |
Sbjct 942 CTCGCACCGTGCCACGCACTGTTCCAGTTCTACGTCGCCGACGGAAAGCTCTC-CTGCCA 884
Query 1270 GGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTACGC 1329
| |||||||||||||||| |||||||||||||| || || ||||| |||||||| |||||
Sbjct 883 GCTCTACCAGCGCAGCGCCGACATGTTCCTCGGCGTCCCCTTCAACATCGCCTCCTACGC 824
Query 1330 GCTCCT 1335
||| ||
Sbjct 823 GCTGCT 818
Score = 109 bits (120), Expect = 3e-19
Identities = 146/197 (74%), Gaps = 7/197 (4%)
Strand=Plus/Minus
Query 1385 TGGACCGGCGGCGACTGCCACATCTACAACAACCACGTCGACCAGGCGCTGATGCAGCTC 1444
||||||||||| ||||||||| ||||| ||||||||||||| |||| || |||||||
Sbjct 701 TGGACCGGCGGGGACTGCCACGTCTACGACAACCACGTCGAGCAGGTGCGCGAGCAGCTC 642
Query 1445 CGCCGACGACCGCGGCCC-TACCCGAGGCTCGTGCTACACCACGC-GCCG---TCGATCT 1499
||| || | ||| ||||||| ||| | ||| | | | |||| |||||||
Sbjct 641 ACGCGA-GAGGCCTACCCGTACCCGACGCT-GCGCTTCGCGCGGAAGCCGGAGTCGATCT 584
Query 1500 TCGACTACCGGTACGAGCACATCCACCTCGTGAACTACGACCCGCACCCGTCGATCAAGG 1559
|||||||||||| |||| || || | ||| | ||||| | | ||| | |||||| ||
Sbjct 583 TCGACTACCGGTTCGAGGACTTCGTCGTCGAGGACTACCAGCACCACGCACCGATCAGGG 524
Query 1560 CGCCGGTGGCCGTCTGA 1576
|| ||||||| || |||
Sbjct 523 CGGCGGTGGCGGTATGA 507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 295322635505535
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |