Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq26502 262 1e-65 >seq26502 Length=2726 Score = 262 bits (290), Expect = 1e-65 Identities = 343/472 (73%), Gaps = 2/472 (0%) Strand=Plus/Minus Query 39548 GAGCGTGTCGCCCCTGGCCAGCAGCTCGTAGGTAGCAACGTCGTCCAGCGGGATGTTCTC 39607 |||||||||||| | ||||||||| |||||| || |||||| || || || ||| Sbjct 2297 GAGCGTGTCGCCGCGGGCCAGCAGTTCGTAGACGGCGGGGTCGTCGAGACCGAGGTGCTC 2238 Query 39608 CAGGTCGACGTGCTCCCCACGGTTGGCGCGGATGTTCTCGACCGCGTCGCCCATGATCGT 39667 || |||| | ||| || ||||| ||||||||| |||| |||||| |||||||| Sbjct 2237 GAGATCGAGCTCCTCGCCCCGGTTCATGCGGATGTTGTCGAGCGCGTCCGAGATGATCGT 2178 Query 39668 GAGGTTCCGGAGCCCGAGGAAGTCCATCTTCACCGCGCCCAGGCTCTCGCACTGGGGGTA 39727 |||||||||||| || |||||||||||||| | | || ||| ||||||| || || Sbjct 2177 GAGGTTCCGGAGGCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCACGACGGATA 2118 Query 39728 GTCCCACTGCGTCACGGTCACGCCGTCCGCAGGGCGGACCCAC-ACCGGGAGGTGATCGA 39786 ||| ||||||| ||| || |||||| ||| || || | ||||| | |||| Sbjct 2117 GTCGAACTGCGTGACGATCTGACCGTCCTGCTCGCG-ACGCATGATCGGGATGATGTCGA 2059 Query 39787 CCAACGGCTCGTTGGACATGATCACACCGGCCGCGTGAACGCCCATCTGCCGGACGAGAC 39846 || |||||| |||||||| || ||||| ||||| |||||| |||||| || | Sbjct 2058 GCAGGGGCTCGGACGACATGATGACGCCGGCGGCGTGCACGCCCCACTGCCGCTTCAGCC 1999 Query 39847 CTTCGAGCCCGAGCGCAGTGTCGATGACCTGCTTCGAGTCCGGGTCGTTCTCGTACAGCC 39906 | ||||| |||||||| ||||| |||| ||||| || |||||| ||||| || Sbjct 1998 CCTCGAGGCCGAGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGGTCGGTCTCGATGAGAG 1939 Query 39907 CACGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATGCCCTCCAGGG 39966 | |||| ||||| |||||| | ||||||||||||| | | || ||| ||||| || |||| Sbjct 1938 CCCGGAACTCGCTCGCCTCCTTGTAGCGCGGGTGCGCGGAGTCGAACATGCCGTCGAGGG 1879 Query 39967 GCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCC 40018 |||| || ||||| ||| | | || ||||||||| ||| ||| || Sbjct 1878 GCATGTCCTTCCCCATGACGGCCGGGGGCATCGCCTTGGTGAGCCGCTCTCC 1827 Score = 159 bits (176), Expect = 1e-34 Identities = 145/180 (81%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 40159 GGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCT 40218 |||| |||||||||| ||| | ||||||||| |||||||| || ||||| |||||||||| Sbjct 1622 GGTCGTCGAAGTCGACGTCGAAGTCGGGCATCGACACGCGGTCCGGGTTGAGGAACCGCT 1563 Query 40219 CGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGAT-GCCGAGGCAGTAGGCGACC 40277 ||||||| || |||||| || ||||| ||||| ||||| | ||| ||||||||| Sbjct 1562 CGAAGATCAGACCGTGCTCGAGAGGGTCGAGGTCGGTGATCTTCATCGCA-TAGGCGACC 1504 Query 40278 AGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAG 40337 | |||||| ||| | ||||| || || || ||||||| | |||||| |||||||||||| Sbjct 1503 ATCGAACCCGCACCGGAGCCGCGCCCCGGACCGACCCGGATGCCGTTGTCCTTGGCCCAG 1444 Score = 159 bits (176), Expect = 1e-34 Identities = 157/200 (79%), Gaps = 12/200 (6%) Strand=Plus/Minus Query 39196 CGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTG---CCCATGGCTCGGCGGAGAAGGT 39252 || ||| |||| |||| ||||| ||||||||| ||||| |||||||| || | || Sbjct 2718 CGTACTGCTTGTCCAG---CTCGGACTTCTTCTTCTTTCCCATCGCTCGGCGCAGGATGT 2662 Query 39253 CGGCCTGACCCAGGCTGTACCCAGCGAGGATCTGTGC---CGCCTTCTGCACCTGCTCCT 39309 | |||||||| |||||| |||| || | |||| || |||| | |||||||||| Sbjct 2661 CAGCCTGACCGAGGCTGAACCCGGCCACCTTCTGCGCGATCGCCATG---ACCTGCTCCT 2605 Query 39310 GGTAGATGACCAGCCCGTAGGTCGGCCCCAGGATCTCGGCAAGCGGCTCCTCCACCTCGG 39369 ||||||||| |||||||||| | | ||||||||||||| ||||||||| ||| ||||| Sbjct 2604 GGTAGATGATGAGCCCGTAGGACTCCTCCAGGATCTCGGCGAGCGGCTCCGCCAGCTCGG 2545 Query 39370 GGTGGATCGGCGTGATCGCC 39389 |||||||||| |||||| || Sbjct 2544 GGTGGATCGGGGTGATCTCC 2525 Score = 100 bits (110), Expect = 9e-17 Identities = 270/402 (67%), Gaps = 11/402 (3%) Strand=Plus/Minus Query 40757 GTAGTGCGAGTCGTTCGTGACCACGGGGGTGAGCGCGAGGTGCTTGCCCAGCCGGTAGAG 40816 ||||||||||||||| || ||||| | | || |||||| || | || || || Sbjct 925 GTAGTGCGAGTCGTTGGTCGCCACGAGCGGGATGCCGAGGTCTTTCGCGAGACGCAGCAG 866 Query 40817 GTC-GTCGCGGACACGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGTACC 40875 || ||| | || || ||||||||| ||||||||||||||||||||| |||||| Sbjct 865 ATCCGTCATG-ACCCGGCGCTCGATCGACAGGCCGTGGTCCATGATCTCGGCGAAGTAGT 807 Query 40876 GGTCCCGACCGAAGACCTCCAGGTACCGGCCAGCCTCGGCAACGGCCTCGTCGTACTGCC 40935 ||| ||||||| ||| || || | || | || ||| |||||||||| | Sbjct 806 TCTCCTTGCCGAAGATGTCCTGGAACTCCGCTGCGGCCGCGCGGGCGGCGTCGTACTGGC 747 Query 40936 CGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGCATCCCGTGGTGACGATCAGGCCCT 40995 |||| ||||| ||| | | | ||| ||||| ||||| ||| |||| || |||| Sbjct 746 CGAGCCGCAGCCGCGTCTGCACCTCTCCGGACGGGCACCCCGTCGTGGCGATGAGCCCCT 687 Query 40996 CGTTGTGC-TCGGCGACCAGGTCGAAGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTC 41053 | || | || | || ||| ||| |||||| ||||| ||| | || | ||||| Sbjct 686 TGCCGTACGTCTG-GAGCAGCTCGCGGTCCATACGCGG---CTTGAAGTAGTA-CCCCTC 632 Query 41054 CTGGTACGAGCGGGAGCTGAGCTTCATGAGGTTGTGCAGGCCGGTCTTGTTCT-CCGCGA 41112 | | ||| | ||||| ||| | ||||||||||| ||| | || ||| | | | Sbjct 631 CATGCTCGACAGCGAGCTCAGCCGGAAGAGGTTGTGCATGCCCTCCGTGCTCTGGCTCCA 572 Query 41113 GGATCGTGAGGTGCGTGTACGCACCGCGACCGCTCACGTCGT 41154 || || | ||| |||||||| || ||| |||||||| Sbjct 571 -CATGGTCATGTGGGTGTACGCGCCCGAACCCGACACGTCGT 531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159714758913480