Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_031078.1
Length=50082
Score E
Sequences producing significant alignments: (Bits) Value
seq26502 262 1e-65
>seq26502
Length=2726
Score = 262 bits (290), Expect = 1e-65
Identities = 343/472 (73%), Gaps = 2/472 (0%)
Strand=Plus/Minus
Query 39548 GAGCGTGTCGCCCCTGGCCAGCAGCTCGTAGGTAGCAACGTCGTCCAGCGGGATGTTCTC 39607
|||||||||||| | ||||||||| |||||| || |||||| || || || |||
Sbjct 2297 GAGCGTGTCGCCGCGGGCCAGCAGTTCGTAGACGGCGGGGTCGTCGAGACCGAGGTGCTC 2238
Query 39608 CAGGTCGACGTGCTCCCCACGGTTGGCGCGGATGTTCTCGACCGCGTCGCCCATGATCGT 39667
|| |||| | ||| || ||||| ||||||||| |||| |||||| ||||||||
Sbjct 2237 GAGATCGAGCTCCTCGCCCCGGTTCATGCGGATGTTGTCGAGCGCGTCCGAGATGATCGT 2178
Query 39668 GAGGTTCCGGAGCCCGAGGAAGTCCATCTTCACCGCGCCCAGGCTCTCGCACTGGGGGTA 39727
|||||||||||| || |||||||||||||| | | || ||| ||||||| || ||
Sbjct 2177 GAGGTTCCGGAGGCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCACGACGGATA 2118
Query 39728 GTCCCACTGCGTCACGGTCACGCCGTCCGCAGGGCGGACCCAC-ACCGGGAGGTGATCGA 39786
||| ||||||| ||| || |||||| ||| || || | ||||| | ||||
Sbjct 2117 GTCGAACTGCGTGACGATCTGACCGTCCTGCTCGCG-ACGCATGATCGGGATGATGTCGA 2059
Query 39787 CCAACGGCTCGTTGGACATGATCACACCGGCCGCGTGAACGCCCATCTGCCGGACGAGAC 39846
|| |||||| |||||||| || ||||| ||||| |||||| |||||| || |
Sbjct 2058 GCAGGGGCTCGGACGACATGATGACGCCGGCGGCGTGCACGCCCCACTGCCGCTTCAGCC 1999
Query 39847 CTTCGAGCCCGAGCGCAGTGTCGATGACCTGCTTCGAGTCCGGGTCGTTCTCGTACAGCC 39906
| ||||| |||||||| ||||| |||| ||||| || |||||| ||||| ||
Sbjct 1998 CCTCGAGGCCGAGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGGTCGGTCTCGATGAGAG 1939
Query 39907 CACGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATGCCCTCCAGGG 39966
| |||| ||||| |||||| | ||||||||||||| | | || ||| ||||| || ||||
Sbjct 1938 CCCGGAACTCGCTCGCCTCCTTGTAGCGCGGGTGCGCGGAGTCGAACATGCCGTCGAGGG 1879
Query 39967 GCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCC 40018
|||| || ||||| ||| | | || ||||||||| ||| ||| ||
Sbjct 1878 GCATGTCCTTCCCCATGACGGCCGGGGGCATCGCCTTGGTGAGCCGCTCTCC 1827
Score = 159 bits (176), Expect = 1e-34
Identities = 145/180 (81%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 40159 GGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCT 40218
|||| |||||||||| ||| | ||||||||| |||||||| || ||||| ||||||||||
Sbjct 1622 GGTCGTCGAAGTCGACGTCGAAGTCGGGCATCGACACGCGGTCCGGGTTGAGGAACCGCT 1563
Query 40219 CGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGAT-GCCGAGGCAGTAGGCGACC 40277
||||||| || |||||| || ||||| ||||| ||||| | ||| |||||||||
Sbjct 1562 CGAAGATCAGACCGTGCTCGAGAGGGTCGAGGTCGGTGATCTTCATCGCA-TAGGCGACC 1504
Query 40278 AGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAG 40337
| |||||| ||| | ||||| || || || ||||||| | |||||| ||||||||||||
Sbjct 1503 ATCGAACCCGCACCGGAGCCGCGCCCCGGACCGACCCGGATGCCGTTGTCCTTGGCCCAG 1444
Score = 159 bits (176), Expect = 1e-34
Identities = 157/200 (79%), Gaps = 12/200 (6%)
Strand=Plus/Minus
Query 39196 CGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTG---CCCATGGCTCGGCGGAGAAGGT 39252
|| ||| |||| |||| ||||| ||||||||| ||||| |||||||| || | ||
Sbjct 2718 CGTACTGCTTGTCCAG---CTCGGACTTCTTCTTCTTTCCCATCGCTCGGCGCAGGATGT 2662
Query 39253 CGGCCTGACCCAGGCTGTACCCAGCGAGGATCTGTGC---CGCCTTCTGCACCTGCTCCT 39309
| |||||||| |||||| |||| || | |||| || |||| | ||||||||||
Sbjct 2661 CAGCCTGACCGAGGCTGAACCCGGCCACCTTCTGCGCGATCGCCATG---ACCTGCTCCT 2605
Query 39310 GGTAGATGACCAGCCCGTAGGTCGGCCCCAGGATCTCGGCAAGCGGCTCCTCCACCTCGG 39369
||||||||| |||||||||| | | ||||||||||||| ||||||||| ||| |||||
Sbjct 2604 GGTAGATGATGAGCCCGTAGGACTCCTCCAGGATCTCGGCGAGCGGCTCCGCCAGCTCGG 2545
Query 39370 GGTGGATCGGCGTGATCGCC 39389
|||||||||| |||||| ||
Sbjct 2544 GGTGGATCGGGGTGATCTCC 2525
Score = 100 bits (110), Expect = 9e-17
Identities = 270/402 (67%), Gaps = 11/402 (3%)
Strand=Plus/Minus
Query 40757 GTAGTGCGAGTCGTTCGTGACCACGGGGGTGAGCGCGAGGTGCTTGCCCAGCCGGTAGAG 40816
||||||||||||||| || ||||| | | || |||||| || | || || ||
Sbjct 925 GTAGTGCGAGTCGTTGGTCGCCACGAGCGGGATGCCGAGGTCTTTCGCGAGACGCAGCAG 866
Query 40817 GTC-GTCGCGGACACGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGTACC 40875
|| ||| | || || ||||||||| ||||||||||||||||||||| ||||||
Sbjct 865 ATCCGTCATG-ACCCGGCGCTCGATCGACAGGCCGTGGTCCATGATCTCGGCGAAGTAGT 807
Query 40876 GGTCCCGACCGAAGACCTCCAGGTACCGGCCAGCCTCGGCAACGGCCTCGTCGTACTGCC 40935
||| ||||||| ||| || || | || | || ||| |||||||||| |
Sbjct 806 TCTCCTTGCCGAAGATGTCCTGGAACTCCGCTGCGGCCGCGCGGGCGGCGTCGTACTGGC 747
Query 40936 CGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGCATCCCGTGGTGACGATCAGGCCCT 40995
|||| ||||| ||| | | | ||| ||||| ||||| ||| |||| || ||||
Sbjct 746 CGAGCCGCAGCCGCGTCTGCACCTCTCCGGACGGGCACCCCGTCGTGGCGATGAGCCCCT 687
Query 40996 CGTTGTGC-TCGGCGACCAGGTCGAAGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTC 41053
| || | || | || ||| ||| |||||| ||||| ||| | || | |||||
Sbjct 686 TGCCGTACGTCTG-GAGCAGCTCGCGGTCCATACGCGG---CTTGAAGTAGTA-CCCCTC 632
Query 41054 CTGGTACGAGCGGGAGCTGAGCTTCATGAGGTTGTGCAGGCCGGTCTTGTTCT-CCGCGA 41112
| | ||| | ||||| ||| | ||||||||||| ||| | || ||| | | |
Sbjct 631 CATGCTCGACAGCGAGCTCAGCCGGAAGAGGTTGTGCATGCCCTCCGTGCTCTGGCTCCA 572
Query 41113 GGATCGTGAGGTGCGTGTACGCACCGCGACCGCTCACGTCGT 41154
|| || | ||| |||||||| || ||| ||||||||
Sbjct 571 -CATGGTCATGTGGGTGTACGCGCCCGAACCCGACACGTCGT 531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 159714758913480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |