Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq80997 250 3e-61 seq95291 205 1e-47 seq221580 102 1e-16 seq55772 100 4e-16 seq152218 93.3 5e-14 seq32149 93.3 5e-14 seq78999 91.5 2e-13 >seq80997 Length=4773 Score = 250 bits (276), Expect = 3e-61 Identities = 321/440 (73%), Gaps = 2/440 (0%) Strand=Plus/Plus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 |||||| | ||||| |||||||| | || || || || | || |||||||| | Sbjct 4335 CTTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 4394 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 ||||||||| ||| | ||| | ||||| |||| || || | || || ||||||| | Sbjct 4395 GATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCC 4453 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| || || || || || || || || || ||| |||| || || | |||||||||| Sbjct 4454 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACA 4513 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 | ||||| |||||||| || ||||| |||| || || || | || || ||||| | Sbjct 4514 ATATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGA 4573 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 ||||||||||||| || | ||||||||| | || ||||| |||||||| |||| | | Sbjct 4574 TCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTG 4633 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 | | |||||| | |||| || |||||||||||||||||||||||| | || | Sbjct 4634 TTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTC 4693 Query 183554 GTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCG 183613 |||| ||||||||||||||||| |||||| ||| || | ||||| || || || Sbjct 4694 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTA 4753 Query 183614 CTGTCTTCCTGGTCTATCCT 183633 |||| ||| || |||||||| Sbjct 4754 CTGTTTTCTTGATCTATCCT 4773 >seq95291 Length=6073 Score = 205 bits (226), Expect = 1e-47 Identities = 284/395 (72%), Gaps = 2/395 (1%) Strand=Plus/Minus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 |||||| | ||||| |||| || | || || || || | || ||||||| | Sbjct 6062 CTTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTTGATGTTTT 6003 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 ||||||||| ||| | ||| | |||| |||| || || | || || ||||||| | Sbjct 6002 GATGATTCCTACTTTATTGACTGCAAAT-TCTGTATTTATTATCGCTTTTATCGCTGCCC 5944 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| || || || || || || || || | ||| |||| || || | |||||||||| Sbjct 5943 CTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTATGGAAACA 5884 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 | ||||| | |||||| || ||||| |||| || || || | || || ||||| | Sbjct 5883 ATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGA 5824 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 ||||||||||||| || | ||||||||| | || ||||| |||||||| |||| | | Sbjct 5823 TCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTG 5764 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 | | |||||| | |||| || |||||||||||||||||||||||| | || | Sbjct 5763 TTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTC 5704 Query 183554 GTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTAT 183588 |||| ||||||||||||||||| |||||| ||| Sbjct 5703 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 5669 >seq221580 Length=2368 Score = 102 bits (112), Expect = 1e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 171000 TATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGT 171059 || ||||| ||| | |||||||| || ||||| || | || || || | ||||| Sbjct 1585 TACATTCTGGATTCAGCTGAAGAGGCTGGATTGGAACTACCATACTCATGCAGAGCTGGA 1644 Query 171060 GCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCT 171119 || || || || |||||||| | | | || ||| |||| ||||| || ||||||||| Sbjct 1645 GCATGCTCTACTTGTGCTGGAAGACTGGATTCAGGTGCTGTGGATCAGTCAGATCAATCT 1704 Query 171120 TTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTACA 171179 || ||||| || | ||||| || ||||| | |||| || || |||||||| || ||| Sbjct 1705 TTTCTTGAAGAACAGCAGATAGAGAAAGGTTACCTTCTCACATGTGTCTCATACCCGACA 1764 Query 171180 AGTGATTGTGTAAT 171193 |||||||| || Sbjct 1765 TCAGATTGTGTGAT 1778 >seq55772 Length=6464 Score = 100 bits (110), Expect = 4e-16 Identities = 153/217 (71%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 171000 TATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGT 171059 || ||||| ||||| || || || || ||| |||| | || ||||| || || || Sbjct 1368 TACATTCTAGATGCAGCAGAGGATGCTGGAGTTGAACTTCCTTACTCGTGCCGCGCCGGA 1309 Query 171060 GCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCT 171119 || || || |||||||||||||| |||| |||||| || ||||| || ||| || Sbjct 1308 GCATGCTCTACCTGTGCTGGGAAGATTGTTTCTGGTTCAGTGGATCAGTCTGATGGCTCA 1249 Query 171120 TTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTACA 171179 ||||||||||| || || | | ||| || | || ||||| ||||| ||||| || Sbjct 1248 TTCCTTGATGACACCCAAATGGGAGAAGGATTTCTACTTACCTGTGTCTCCTATCCAACT 1189 Query 171180 AGTGATTGTGTAATCTTGACTGAACAGGAA-GAGAAC 171215 ||||||||||| ||| | ||||| |||||| Sbjct 1188 GCAGATTGTGTAATTGAAACTCACAAGGAAGGAGAAC 1152 Score = 95.1 bits (104), Expect = 2e-14 Identities = 152/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 171000 TATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGT 171059 || ||||| ||||| || || || || ||| |||| | || ||||| || || || Sbjct 3836 TACATTCTAGATGCAGCAGAGGATGCTGGAGTTGAACTTCCTTACTCGTGCCGCGCCGGA 3777 Query 171060 GCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCT 171119 || || || |||||||||||||| |||| |||||| | ||||| || ||| || Sbjct 3776 GCATGCTCTACCTGTGCTGGGAAGATTGTATCTGGTTCATTGGATCAGTCTGATGGCTCA 3717 Query 171120 TTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTACA 171179 ||||||||||| || || | | ||| || | || ||||| ||||| ||||| || Sbjct 3716 TTCCTTGATGACACCCAAATGGGAGAAGGATTTCTACTTACCTGTGTCTCCTATCCAACT 3657 Query 171180 AGTGATTGTGTAATCTTGACTGAACAGGAA-GAGAAC 171215 ||||||||||| ||| | ||||| |||||| Sbjct 3656 GCAGATTGTGTAATTGAAACTCACAAGGAAGGAGAAC 3620 >seq152218 Length=324 Score = 93.3 bits (102), Expect = 5e-14 Identities = 126/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 170995 ATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTG 171054 || |||| |||||||||||||| ||||| ||| ||||| | ||| || || | | Sbjct 282 ATGAATACATTCTTGATGCTGCAGAAGATCAAGGGCTTGATCTTCCCTACTCATGCAGGG 223 Query 171055 CTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATC 171114 |||||||||| || ||||| |||| ||| ||| |||||| | || || || || || | Sbjct 222 CTGGTGCTTGCTCTTCCTGTACTGGAAAAGTTGTGAGTGGCACAGTGGACCAGTCAGA-C 164 Query 171115 AATCT-TTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGT 171166 ||| ||||||||||| || || || | ||| || |||| |||||||| Sbjct 163 AATAGCTTCCTTGATGACGACCAAATCGGTCTAGGATTTGTTCTCACCTGCGT 111 >seq32149 Length=26709 Score = 93.3 bits (102), Expect = 5e-14 Identities = 126/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 170995 ATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTG 171054 || |||| |||||||||||||| ||||| ||| ||||| | ||| || || | | Sbjct 21043 ATGAATACATTCTTGATGCTGCAGAAGATCAAGGGCTTGATCTTCCCTACTCATGCAGGG 20984 Query 171055 CTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATC 171114 |||||||||| || ||||| |||| ||| ||| |||||| | || || || || || | Sbjct 20983 CTGGTGCTTGCTCTTCCTGTACTGGAAAAGTTGTGAGTGGCACAGTGGACCAGTCAGA-C 20925 Query 171115 AATCT-TTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGT 171166 ||| ||||||||||| || || || | ||| || |||| |||||||| Sbjct 20924 AATAGCTTCCTTGATGACGACCAAATCGGTCTAGGATTTGTTCTCACCTGCGT 20872 >seq78999 Length=659 Score = 91.5 bits (100), Expect = 2e-13 Identities = 203/302 (67%), Gaps = 2/302 (1%) Strand=Plus/Minus Query 186672 TTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATG 186731 || |||||| | ||||| |||| || |||||| ||||| | | || || ||| Sbjct 315 TTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACGTT-CTGTATG 257 Query 186732 CTCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTT 186791 | ||||| || || | ||| | ||| | | | |||| | || || | || || Sbjct 256 TTATTTGTACCAGTAACTGGTTTACGGATCATTACTTTTGGGGTAGTTAGTTTGGCCCTA 197 Query 186792 AACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTC 186851 ||||| ||||||||||||||||| | | || | | | |||||| |||||| | || Sbjct 196 AACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATCCTTA-TTT 138 Query 186852 GAGACGTTCTATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCA 186911 ||||| ||||| ||||| | ||| | || || |||||| | |||| ||||||| | Sbjct 137 GAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTGGGTGGATGGGAGTT 78 Query 186912 GTGGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCT 186971 ||| | | ||||||||| || |||| || |||| || | ||| || ||| || Sbjct 77 CAAGATTAGCTTCATGAAAACCTTATATTCGCTAAAGAGGTTCTACCACATGGAAACACT 18 Query 186972 CT 186973 || Sbjct 17 CT 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620328330724200