Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq80997 246 3e-60 seq95291 221 1e-52 seq13836 118 1e-21 seq78999 91.5 2e-13 seq76780 87.8 2e-12 >seq80997 Length=4773 Score = 246 bits (272), Expect = 3e-60 Identities = 323/441 (73%), Gaps = 6/441 (1%) Strand=Plus/Plus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||||| ||| |||| ||||| |||||| | || | || ||||| || || || Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395 Query 163988 ATGATTCCCTGCCTGCTGGCAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTCC 164046 |||||||| | || | || ||| | ||| || || ||||| || |||| ||| || Sbjct 4396 ATGATTCCTACTTTATTGACTGCAACTTC-TGTATTTATTATCGCTTTTATCGCTGCCCC 4454 Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106 ||| || || || ||||| || || || || || |||| || || | ||||||||||| Sbjct 4455 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 4514 Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166 ||||| |||||||| |||| ||| ||||| ||||| ||| |||| || || || || Sbjct 4515 TATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGAT 4574 Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226 |||||||||||| | | || || ||| | |||||||| ||||||| |||| |||| Sbjct 4575 CTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGT 4634 Query 164227 GTTCCACTTCCTGATTG--GCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTAC 164284 | |||||| | ||| | | || ||| |||||||||||||||||||||||| || Sbjct 4635 TCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGTTTT 4692 Query 164285 CGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGT 164344 ||||| |||||||||||||||||| || ||||| | |||| ||| | || || | | Sbjct 4693 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACT 4752 Query 164345 GCAGTGTTCCTGGTCTATCCT 164365 | || ||| || |||||||| Sbjct 4753 ACTGTTTTCTTGATCTATCCT 4773 >seq95291 Length=6073 Score = 221 bits (244), Expect = 1e-52 Identities = 303/415 (73%), Gaps = 10/415 (2%) Strand=Plus/Minus Query 163919 TGGGAACAATTCTGTAACTGGGTAACTTCAAC--CGACAATCGTTTGTATGTCGGTTGGT 163976 |||| || |||||||| ||| |||| |||| ||| |||||| | || | || |||| Sbjct 6070 TGGGGTCACTTCTGTAATTGGATAAC--CAACATCGAAAATCGTCTTTACATTGGATGGT 6013 Query 163977 TCGGCGTCCTGATGATTCCCTGCCTGCTGGCAGCGACTACATGT-TTCATCATCGCCTTC 164035 | | || |||||||||| | || | || | | | ||| || || ||||| || Sbjct 6012 TTGATGTTTTGATGATTCCTACTTTATTGACTGCAAATTC-TGTATTTATTATCGCTTTT 5954 Query 164036 ATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATG 164095 |||| ||| ||||| || || || ||||| || || || | || |||| || || | Sbjct 5953 ATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTT 5894 Query 164096 TATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCAC 164155 ||||||||||| ||||| | |||||| |||| ||| ||||| ||||| ||| |||| Sbjct 5893 TATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCAT 5834 Query 164156 TTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTC 164215 || || || |||||||||||||| | | || || ||| | |||||||| ||||||| Sbjct 5833 TTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTAT 5774 Query 164216 CAACTCGTTGTGTTCCACTTCCTGATTGGCAT--CTATGCTTACATGGGTCGTGAGTGGG 164273 |||| |||| | |||||| | |||| | || |||| |||||||||||||||||| Sbjct 5773 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGCT-ACATGGGTCGTGAGTGGG 5716 Query 164274 AACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCC 164328 ||||| || ||||| |||||||||||||||||| || ||||| || ||||| Sbjct 5715 AACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661 >seq13836 Length=10167 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 165432 GGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTT 165491 || || || ||||||||||| || |||||||| || || | | | ||||| |||||| | Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529 Query 165492 CGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTC 165550 || || |||||||| || ||| || || | | || ||||| ||||| | || ||||| Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAACCGCATTCTC 4588 Query 165551 TGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTG 165610 ||||| |||||||| || ||| ||| || ||||| ||||| ||||| || || || Sbjct 4589 AGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTG 4648 Query 165611 GTTCTTCGCACC 165622 |||||| || || Sbjct 4649 GTTCTTTGCTCC 4660 >seq78999 Length=659 Score = 91.5 bits (100), Expect = 2e-13 Identities = 210/314 (67%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 165856 CTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACT 165915 |||| || || ||||| | || ||| |||||||| |||||| ||||| | | | Sbjct 323 CTAATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACG-T 265 Query 165916 TCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTC 165975 ||| |||| | ||||| || || | || | ||| | | || |||| | || || Sbjct 264 TCTGTATGTTATTTGTACCAGTAACTGGTTTACGGATCATTACTTTTGGGGTAGTTAGTT 205 Query 165976 TCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATC 166035 | || || || || ||||||||||| ||||| ||| | || ||| | | || || |||| Sbjct 204 TGGCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATC 145 Query 166036 CAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGT 166095 | | ||||| || ||||| || |||| || || | || ||||| | |||| ||| Sbjct 144 CTTA-TTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTGGGTGGA 86 Query 166096 TGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAG 166155 ||| | ||| | | |||||| ||| || | ||| || |||| || | ||| | Sbjct 85 TGGGAGTTCAAGATTAGCTTCATGAAAACCTTATATTCGCTAAAGAGGTTCTACCACATG 26 Query 166156 GCAACGCACTTTAA 166169 | ||| | |||||| Sbjct 25 GAAACACTCTTTAA 12 >seq76780 Length=5561 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 165300 GCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGA 165358 || ||||| ||| | || || ||||| ||| | || || |||||||| ||||| || | Sbjct 411 GCAAGTTCTTATTTAGAAGGCTGCAA-CTTCTTAACCGCTGCAGTTTCCACTCCCGCTAA 353 Query 165359 CGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCG 165418 | | | || ||| | || | || ||||||||||| | || || | || | | | Sbjct 352 TAGTTTAGCACACTCTTTGTTGATACTGTGGGGTCCTGAAGCACAGGGAAATTTTACCTG 293 Query 165419 CTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTAT 165478 ||||| || | || || || ||||||||||| || ||||||| || || | | | || Sbjct 292 TTGGTGTCAGTTAGGCGGTCTGTGGACTTTTGTTGCTTTCCACGGTGCTTTCGGATTAAT 233 Query 165479 AGGTTTCATGCTTCGCCAGTTTGAACT 165505 |||||||||| | || | |||||||| Sbjct 232 AGGTTTCATGTTACGTTAATTTGAACT 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556092723706200