Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_031242.1
Length=174307
Score E
Sequences producing significant alignments: (Bits) Value
seq80997 246 3e-60
seq95291 221 1e-52
seq13836 118 1e-21
seq78999 91.5 2e-13
seq76780 87.8 2e-12
>seq80997
Length=4773
Score = 246 bits (272), Expect = 3e-60
Identities = 323/441 (73%), Gaps = 6/441 (1%)
Strand=Plus/Plus
Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987
|||||||| ||| |||| ||||| |||||| | || | || ||||| || || ||
Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395
Query 163988 ATGATTCCCTGCCTGCTGGCAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTCC 164046
|||||||| | || | || ||| | ||| || || ||||| || |||| ||| ||
Sbjct 4396 ATGATTCCTACTTTATTGACTGCAACTTC-TGTATTTATTATCGCTTTTATCGCTGCCCC 4454
Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106
||| || || || ||||| || || || || || |||| || || | |||||||||||
Sbjct 4455 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 4514
Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166
||||| |||||||| |||| ||| ||||| ||||| ||| |||| || || || ||
Sbjct 4515 TATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGAT 4574
Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226
|||||||||||| | | || || ||| | |||||||| ||||||| |||| ||||
Sbjct 4575 CTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGT 4634
Query 164227 GTTCCACTTCCTGATTG--GCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTAC 164284
| |||||| | ||| | | || ||| |||||||||||||||||||||||| ||
Sbjct 4635 TCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGTTTT 4692
Query 164285 CGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGT 164344
||||| |||||||||||||||||| || ||||| | |||| ||| | || || | |
Sbjct 4693 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACT 4752
Query 164345 GCAGTGTTCCTGGTCTATCCT 164365
| || ||| || ||||||||
Sbjct 4753 ACTGTTTTCTTGATCTATCCT 4773
>seq95291
Length=6073
Score = 221 bits (244), Expect = 1e-52
Identities = 303/415 (73%), Gaps = 10/415 (2%)
Strand=Plus/Minus
Query 163919 TGGGAACAATTCTGTAACTGGGTAACTTCAAC--CGACAATCGTTTGTATGTCGGTTGGT 163976
|||| || |||||||| ||| |||| |||| ||| |||||| | || | || ||||
Sbjct 6070 TGGGGTCACTTCTGTAATTGGATAAC--CAACATCGAAAATCGTCTTTACATTGGATGGT 6013
Query 163977 TCGGCGTCCTGATGATTCCCTGCCTGCTGGCAGCGACTACATGT-TTCATCATCGCCTTC 164035
| | || |||||||||| | || | || | | | ||| || || ||||| ||
Sbjct 6012 TTGATGTTTTGATGATTCCTACTTTATTGACTGCAAATTC-TGTATTTATTATCGCTTTT 5954
Query 164036 ATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATG 164095
|||| ||| ||||| || || || ||||| || || || | || |||| || || |
Sbjct 5953 ATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTT 5894
Query 164096 TATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCAC 164155
||||||||||| ||||| | |||||| |||| ||| ||||| ||||| ||| ||||
Sbjct 5893 TATGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCAT 5834
Query 164156 TTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTC 164215
|| || || |||||||||||||| | | || || ||| | |||||||| |||||||
Sbjct 5833 TTTTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTAT 5774
Query 164216 CAACTCGTTGTGTTCCACTTCCTGATTGGCAT--CTATGCTTACATGGGTCGTGAGTGGG 164273
|||| |||| | |||||| | |||| | || |||| ||||||||||||||||||
Sbjct 5773 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGCT-ACATGGGTCGTGAGTGGG 5716
Query 164274 AACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCC 164328
||||| || ||||| |||||||||||||||||| || ||||| || |||||
Sbjct 5715 AACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661
>seq13836
Length=10167
Score = 118 bits (130), Expect = 1e-21
Identities = 143/192 (74%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 165432 GGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTT 165491
|| || || ||||||||||| || |||||||| || || | | | ||||| |||||| |
Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529
Query 165492 CGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTC 165550
|| || |||||||| || ||| || || | | || ||||| ||||| | || |||||
Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAACCGCATTCTC 4588
Query 165551 TGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTG 165610
||||| |||||||| || ||| ||| || ||||| ||||| ||||| || || ||
Sbjct 4589 AGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTG 4648
Query 165611 GTTCTTCGCACC 165622
|||||| || ||
Sbjct 4649 GTTCTTTGCTCC 4660
>seq78999
Length=659
Score = 91.5 bits (100), Expect = 2e-13
Identities = 210/314 (67%), Gaps = 2/314 (1%)
Strand=Plus/Minus
Query 165856 CTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACT 165915
|||| || || ||||| | || ||| |||||||| |||||| ||||| | | |
Sbjct 323 CTAATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACG-T 265
Query 165916 TCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTC 165975
||| |||| | ||||| || || | || | ||| | | || |||| | || ||
Sbjct 264 TCTGTATGTTATTTGTACCAGTAACTGGTTTACGGATCATTACTTTTGGGGTAGTTAGTT 205
Query 165976 TCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATC 166035
| || || || || ||||||||||| ||||| ||| | || ||| | | || || ||||
Sbjct 204 TGGCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATC 145
Query 166036 CAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGT 166095
| | ||||| || ||||| || |||| || || | || ||||| | |||| |||
Sbjct 144 CTTA-TTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTGGGTGGA 86
Query 166096 TGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAG 166155
||| | ||| | | |||||| ||| || | ||| || |||| || | ||| |
Sbjct 85 TGGGAGTTCAAGATTAGCTTCATGAAAACCTTATATTCGCTAAAGAGGTTCTACCACATG 26
Query 166156 GCAACGCACTTTAA 166169
| ||| | ||||||
Sbjct 25 GAAACACTCTTTAA 12
>seq76780
Length=5561
Score = 87.8 bits (96), Expect = 2e-12
Identities = 145/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 165300 GCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGA 165358
|| ||||| ||| | || || ||||| ||| | || || |||||||| ||||| || |
Sbjct 411 GCAAGTTCTTATTTAGAAGGCTGCAA-CTTCTTAACCGCTGCAGTTTCCACTCCCGCTAA 353
Query 165359 CGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCG 165418
| | | || ||| | || | || ||||||||||| | || || | || | | |
Sbjct 352 TAGTTTAGCACACTCTTTGTTGATACTGTGGGGTCCTGAAGCACAGGGAAATTTTACCTG 293
Query 165419 CTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTAT 165478
||||| || | || || || ||||||||||| || ||||||| || || | | | ||
Sbjct 292 TTGGTGTCAGTTAGGCGGTCTGTGGACTTTTGTTGCTTTCCACGGTGCTTTCGGATTAAT 233
Query 165479 AGGTTTCATGCTTCGCCAGTTTGAACT 165505
|||||||||| | || | ||||||||
Sbjct 232 AGGTTTCATGTTACGTTAATTTGAACT 206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556092723706200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |