Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_031262.1 Length=54751 Score E Sequences producing significant alignments: (Bits) Value seq24349 515 1e-141 >seq24349 Length=3626 Score = 515 bits (570), Expect = 1e-141 Identities = 598/796 (75%), Gaps = 13/796 (2%) Strand=Plus/Minus Query 40809 GGTGATGCTTGGGCAGGGCATGAACCTGCAGCAGGCCCACGTCTGTGTCTACATCGGCGT 40868 ||||||||| || ||||||||||||||||||||||| ||| |||| | ||||||| Sbjct 2300 GGTGATGCTCGGCCAGGGCATGAACCTGCAGCAGGCGCACACGGCCGTCTTCGTCGGCGT 2241 Query 40869 CACGCACAAGTTCAACGACCTGATCCAGAGCTTGCACCGGATTCAGCGTTTCGGCCAAAC 40928 ||| |||| ||||||||| ||||||| | ||||||| || ||||| ||||| || | Sbjct 2240 CACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCATCCAGCGCTTCGGACAG-C 2182 Query 40929 ACACC-CTTGCACAGCCCATCTCATCCATTCAGAAACCGAACGGGAAGTGGTTCGCATCA 40987 | | | | ||| | || || ||| | | |||||||| || | | ||| || Sbjct 2181 AGAGCACCTGCGACGTGCACCTGATCTACGCCGAAACCGAGTCCGA---GATCCGCGACA 2125 Query 40988 TCCGC---GAGAAATGGGCCCAGCACAGAGAGCTGACATCAACTATGACTGACATAATCC 41044 || | | ||| |||| ||||| |||| || || |||| ||| | |||| Sbjct 2124 CCCTCCTGGCGAAGTGGGAAGAGCACGACCAGCTCACCGACACCATGAGCGACGTGATCC 2065 Query 41045 ACGAATACGGGCTTGACCCCGAGGCAATCTCGGAAGCTCTGCAACGGTCCATCGGATGCG 41104 ||| | ||| || |||||| || ||||| | || || || |||| || || Sbjct 2064 GCGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTCACCCGCGCCATGGGCGTCG 2005 Query 41105 AACGAATCGAAGCATCCGGCGAGGGCTGGTTGTTCGCCAACAACGACTGCGTGCCCGAAA 41164 | || ||||||||||||| |||||| | |||| ||||||||||||| ||| | Sbjct 2004 AGCGCGTCGAAGCATCCGGGCCCGGCTGGACGCTCGCGCTCAACGACTGCGTGATCGAGA 1945 Query 41165 CCAA-GTCCATG-GGCGACAG-CTCGGTAGATCTGATTGTCACCAGCATTCCGTTCTCCA 41221 || | ||| ||| || | ||| || || ||||| ||||| || |||||||| | Sbjct 1944 CCCGCGACCACATGGCCACGGACTCCGTCGACCTGATCGTCACGTCGATCCCGTTCTCGA 1885 Query 41222 ACCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACACCGACGACAACGCGCATT 41281 |||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| | Sbjct 1884 ACCACTACGAGTACACCCCCAGCTACAACGACTTCGGCCACACCGACGACAACCTGCACT 1825 Query 41282 TCTGGGCGCAGATGGACTACCTCACGCCGCAGCTGCTGCGCATCCTTGCGCCCGGG-CGG 41340 ||||| |||||||||||||||||| ||| |||| ||||| | || ||| || || ||| Sbjct 1824 TCTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGCGGGTGCT-GCGTCCAGGACGG 1766 Query 41341 ATCTACGCCTGCCATGTCAAGGACCGCATCTTGTTCGGAAACGTCACCGGCGCAGGCGTT 41400 ||||| |||||||| || ||||| || ||| |||||| ||||||||||| || ||| | Sbjct 1765 ATCTATGCCTGCCACGTGAAGGATCGAATCCAGTTCGGCAACGTCACCGGAGCCGGCATC 1706 Query 41401 CCCACCGTCTCCCCGTTCCACGCCGAGGCGATCTTCCACGGCCGCAAACACGGCTTCGAC 41460 ||||||||||| |||||||||||||| ||| || ||||||| ||| || ||||||||| Sbjct 1705 CCCACCGTCTCACCGTTCCACGCCGAAGCGCTCGCGCACGGCCTCAAGCATGGCTTCGAC 1646 Query 41461 TACCTCGGCATGATCACCGTGGTCACCGATGTGGTGCGGGAAAACAACCAGACGTACCGG 41520 ||| | |||||||||||||| |||||| || ||||| || ||||||||||| ||||| Sbjct 1645 TACATGGGCATGATCACCGTCACCACCGACGTCGTGCGCGAGAACAACCAGACCTACCGC 1586 Query 41521 CTGGGCTGGTCGGAGCAGTGCAAGGACGCTACGAAGATGGGCGTCGGCTCGCCGGAATAC 41580 || |||| ||||| | ||||||||| |||||||||||||||||||| || || ||| Sbjct 1585 CTCGGCTACGCGGAGATGCGCAAGGACGGCACGAAGATGGGCGTCGGCTCACCCGAGTAC 1526 Query 41581 ATTCTGTTGTTCCACA 41596 || ||| | ||||||| Sbjct 1525 ATCCTGCTCTTCCACA 1510 Score = 183 bits (202), Expect = 1e-41 Identities = 185/237 (78%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 40041 CGGTATCTACCTCACCAACTACGAGAGCGTTCGCGATGGAAAGCTCGACCCGAC-ACTG- 40098 ||| |||||| |||| |||||||||||||| ||||| || |||| ||| | || | Sbjct 3194 CGGCATCTACGTCACGAACTACGAGAGCGTGCGCGACGGCCGCCTCG--CCGTCGACGGC 3137 Query 40099 TTCACGGCCGTCTCACTCGACGAGGCGAGCGTGCTGCGCTCGTTCGGGTCCAAGACGTAC 40158 ||| || ||| ||||||||||| |||||||||||| ||||| || ||||| ||| Sbjct 3136 TTCGACGCGGTCAGCCTCGACGAGGCATCCGTGCTGCGCTCCTTCGGATCGAAGACCTAC 3077 Query 40159 CAGTCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGCCACCGCCACGCCA 40218 ||| |||||||| |||||||||| | | || ||||| | ||| |||||||| ||||| Sbjct 3076 CAGGAGTTCCTCGGCCTGTTCGACGAGATCCCGTACCGCTTCGTGGCCACCGCGACGCCG 3017 Query 40219 TCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGTTATCTCGGGGTGATGGAC 40275 || || |||||| |||||||||||||||||||||| || | ||||| | |||||| Sbjct 3016 TCACCCAACCGGCACAAGGAGCTGATCCACTACGCCGGGTTCCTCGGCCTCATGGAC 2960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 174615810175710