Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_031266.1 Length=44872 Score E Sequences producing significant alignments: (Bits) Value seq24349 495 1e-135 >seq24349 Length=3626 Score = 495 bits (548), Expect = 1e-135 Identities = 591/795 (74%), Gaps = 13/795 (2%) Strand=Plus/Minus Query 38955 GTGATGCTCGGGCAGGGCATGAACCTGCAACAGGCGCACACCTGCGTCTACATCGGCATC 39014 ||||||||||| ||||||||||||||||| ||||||||||| ||||| | ||||| || Sbjct 2299 GTGATGCTCGGCCAGGGCATGAACCTGCAGCAGGCGCACACGGCCGTCTTCGTCGGCGTC 2240 Query 39015 ACGCACAAGTTCAACGATCTGATCCAGAGCTTGCACCGGATTCAGCGGTTCGGCCAAACC 39074 || |||| |||||||| ||||||| | ||||||| || ||||| ||||| || | Sbjct 2239 ACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCATCCAGCGCTTCGGACAG-CA 2181 Query 39075 CATC-CCTGTACAGCCCATTTGATCCATTCCGAAACCGAGCGGGAAGTGGTGCGGGTGAT 39133 | | |||| | || ||||| | ||||||||||| || | | || | | Sbjct 2180 GAGCACCTGCGACGTGCACCTGATCTACGCCGAAACCGAGTCCGA---GATCCGCGACAC 2124 Query 39134 CCGC---GAGAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCACCATCATTCA 39190 || | | ||| |||| | | ||| || | || || |||| | | | || | Sbjct 2123 CCTCCTGGCGAAGTGGGAAGAGCACGACCAGCTCACCGACACCATGAGCGACGTGATCCG 2064 Query 39191 TGAGTACGGACTTGACCCCGAGGCAATTTCGGAAGCGCTGCAACGCTCCATCGGATGCGA 39250 |||| |||||| |||||| || || || | || || ||| |||| || ||| Sbjct 2063 CGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTCACCCGCGCCATGGGCGTCGA 2004 Query 39251 ACGCATCGAAACATCCGGTGAGGGATGGGTGTTCGCCAACAACGACTGCGTTCACGAAAC 39310 ||| ||||| ||||||| || ||| | |||| |||||||||||| ||| || Sbjct 2003 GCGCGTCGAAGCATCCGGGCCCGGCTGGACGCTCGCGCTCAACGACTGCGTGATCGAGAC 1944 Query 39311 C---GAGAGAATGGCAGACGATTCGGTGGATCTGATTGTCACCAGCATTCCGTTCTCCAA 39367 | || ||||| || || || || ||||| ||||| || |||||||| || Sbjct 1943 CCGCGACCACATGGCCACGGACTCCGTCGACCTGATCGTCACGTCGATCCCGTTCTCGAA 1884 Query 39368 CCACTACGAGTACACGCCGAGCTACAACGATTTCGGCCACACCGACGACAACGCGCATTT 39427 ||||||||||||||| || ||||||||||| ||||||||||||||||||||| ||| || Sbjct 1883 CCACTACGAGTACACCCCCAGCTACAACGACTTCGGCCACACCGACGACAACCTGCACTT 1824 Query 39428 CTGGGCGCAGATGGACTACCTCACACCGCAGCTGCTGCGCATCCTCGCG-CCGGGCCGTA 39486 |||| |||||||||||||||||| ||| |||| ||||| | || ||| || || || | Sbjct 1823 CTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGCGGGTGCT-GCGTCCAGGACGGA 1765 Query 39487 TCTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGGCAACGTCACCGGCGCCGGCGTGC 39546 |||| ||||||||||| ||||| || ||| |||||||||||||||||| |||||| | | Sbjct 1764 TCTATGCCTGCCACGTGAAGGATCGAATCCAGTTCGGCAACGTCACCGGAGCCGGCATCC 1705 Query 39547 CCACCGTGTCCCCGTTTCACGCCGAGGCGATCTTCCACGGCCGCAAACACGGCTTCGACT 39606 ||||||| || ||||| |||||||| ||| || ||||||| ||| || |||||||||| Sbjct 1704 CCACCGTCTCACCGTTCCACGCCGAAGCGCTCGCGCACGGCCTCAAGCATGGCTTCGACT 1645 Query 39607 ACCTCGGCATGATCACCGTCGTAACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGC 39666 || | ||||||||||||||| ||||| || ||||| || ||||||||||| ||||| | Sbjct 1644 ACATGGGCATGATCACCGTCACCACCGACGTCGTGCGCGAGAACAACCAGACCTACCGCC 1585 Query 39667 TGGGCTGGTCCGAGCAGTGCAAAGACGCCACCAAGATGGGCGTCGGCTCCCCGGAATACA 39726 | |||| | ||| | |||| |||| ||| ||||||||||||||||| || || |||| Sbjct 1584 TCGGCTACGCGGAGATGCGCAAGGACGGCACGAAGATGGGCGTCGGCTCACCCGAGTACA 1525 Query 39727 TTCTGCTGTTCCACA 39741 | ||||| ||||||| Sbjct 1524 TCCTGCTCTTCCACA 1510 Score = 179 bits (198), Expect = 1e-40 Identities = 184/237 (78%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 38186 CGGTATCTACCTCACCAACTACGAGAGCGTTCGCGATGGAAAGCTCGACCCGAC-ACTG- 38243 ||| |||||| |||| |||||||||||||| ||||| || |||| ||| | || | Sbjct 3194 CGGCATCTACGTCACGAACTACGAGAGCGTGCGCGACGGCCGCCTCG--CCGTCGACGGC 3137 Query 38244 TTCACGGCCGTCTCACTCGACGAGGCGAGCGTGCTGCGCTCGTTCGGGTCCAAGACGTAC 38303 ||| || ||| ||||||||||| |||||||||||| ||||| || ||||| ||| Sbjct 3136 TTCGACGCGGTCAGCCTCGACGAGGCATCCGTGCTGCGCTCCTTCGGATCGAAGACCTAC 3077 Query 38304 CAGTCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGCCACCGCCACACCC 38363 ||| |||||||| |||||||||| | | || ||||| | ||| |||||||| || || Sbjct 3076 CAGGAGTTCCTCGGCCTGTTCGACGAGATCCCGTACCGCTTCGTGGCCACCGCGACGCCG 3017 Query 38364 TCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGCTATCTCGGGGTGATGGAC 38420 || || |||||| |||||||||||||||||||||| || | ||||| | |||||| Sbjct 3016 TCACCCAACCGGCACAAGGAGCTGATCCACTACGCCGGGTTCCTCGGCCTCATGGAC 2960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143087113362780