Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_031266.1
Length=44872
Score E
Sequences producing significant alignments: (Bits) Value
seq24349 495 1e-135
>seq24349
Length=3626
Score = 495 bits (548), Expect = 1e-135
Identities = 591/795 (74%), Gaps = 13/795 (2%)
Strand=Plus/Minus
Query 38955 GTGATGCTCGGGCAGGGCATGAACCTGCAACAGGCGCACACCTGCGTCTACATCGGCATC 39014
||||||||||| ||||||||||||||||| ||||||||||| ||||| | ||||| ||
Sbjct 2299 GTGATGCTCGGCCAGGGCATGAACCTGCAGCAGGCGCACACGGCCGTCTTCGTCGGCGTC 2240
Query 39015 ACGCACAAGTTCAACGATCTGATCCAGAGCTTGCACCGGATTCAGCGGTTCGGCCAAACC 39074
|| |||| |||||||| ||||||| | ||||||| || ||||| ||||| || |
Sbjct 2239 ACCTACAAATTCAACGACACGATCCAGGCCGTGCACCGCATCCAGCGCTTCGGACAG-CA 2181
Query 39075 CATC-CCTGTACAGCCCATTTGATCCATTCCGAAACCGAGCGGGAAGTGGTGCGGGTGAT 39133
| | |||| | || ||||| | ||||||||||| || | | || | |
Sbjct 2180 GAGCACCTGCGACGTGCACCTGATCTACGCCGAAACCGAGTCCGA---GATCCGCGACAC 2124
Query 39134 CCGC---GAGAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCACCATCATTCA 39190
|| | | ||| |||| | | ||| || | || || |||| | | | || |
Sbjct 2123 CCTCCTGGCGAAGTGGGAAGAGCACGACCAGCTCACCGACACCATGAGCGACGTGATCCG 2064
Query 39191 TGAGTACGGACTTGACCCCGAGGCAATTTCGGAAGCGCTGCAACGCTCCATCGGATGCGA 39250
|||| |||||| |||||| || || || | || || ||| |||| || |||
Sbjct 2063 CGAGTTCGGACTCAACCCCGCCGCGATCTCCGCCGCACTCACCCGCGCCATGGGCGTCGA 2004
Query 39251 ACGCATCGAAACATCCGGTGAGGGATGGGTGTTCGCCAACAACGACTGCGTTCACGAAAC 39310
||| ||||| ||||||| || ||| | |||| |||||||||||| ||| ||
Sbjct 2003 GCGCGTCGAAGCATCCGGGCCCGGCTGGACGCTCGCGCTCAACGACTGCGTGATCGAGAC 1944
Query 39311 C---GAGAGAATGGCAGACGATTCGGTGGATCTGATTGTCACCAGCATTCCGTTCTCCAA 39367
| || ||||| || || || || ||||| ||||| || |||||||| ||
Sbjct 1943 CCGCGACCACATGGCCACGGACTCCGTCGACCTGATCGTCACGTCGATCCCGTTCTCGAA 1884
Query 39368 CCACTACGAGTACACGCCGAGCTACAACGATTTCGGCCACACCGACGACAACGCGCATTT 39427
||||||||||||||| || ||||||||||| ||||||||||||||||||||| ||| ||
Sbjct 1883 CCACTACGAGTACACCCCCAGCTACAACGACTTCGGCCACACCGACGACAACCTGCACTT 1824
Query 39428 CTGGGCGCAGATGGACTACCTCACACCGCAGCTGCTGCGCATCCTCGCG-CCGGGCCGTA 39486
|||| |||||||||||||||||| ||| |||| ||||| | || ||| || || || |
Sbjct 1823 CTGGCAGCAGATGGACTACCTCACTCCGGAGCTCCTGCGGGTGCT-GCGTCCAGGACGGA 1765
Query 39487 TCTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGGCAACGTCACCGGCGCCGGCGTGC 39546
|||| ||||||||||| ||||| || ||| |||||||||||||||||| |||||| | |
Sbjct 1764 TCTATGCCTGCCACGTGAAGGATCGAATCCAGTTCGGCAACGTCACCGGAGCCGGCATCC 1705
Query 39547 CCACCGTGTCCCCGTTTCACGCCGAGGCGATCTTCCACGGCCGCAAACACGGCTTCGACT 39606
||||||| || ||||| |||||||| ||| || ||||||| ||| || ||||||||||
Sbjct 1704 CCACCGTCTCACCGTTCCACGCCGAAGCGCTCGCGCACGGCCTCAAGCATGGCTTCGACT 1645
Query 39607 ACCTCGGCATGATCACCGTCGTAACCGATGTGGTGCGGGAAAACAACCAGACGTACCGGC 39666
|| | ||||||||||||||| ||||| || ||||| || ||||||||||| ||||| |
Sbjct 1644 ACATGGGCATGATCACCGTCACCACCGACGTCGTGCGCGAGAACAACCAGACCTACCGCC 1585
Query 39667 TGGGCTGGTCCGAGCAGTGCAAAGACGCCACCAAGATGGGCGTCGGCTCCCCGGAATACA 39726
| |||| | ||| | |||| |||| ||| ||||||||||||||||| || || ||||
Sbjct 1584 TCGGCTACGCGGAGATGCGCAAGGACGGCACGAAGATGGGCGTCGGCTCACCCGAGTACA 1525
Query 39727 TTCTGCTGTTCCACA 39741
| ||||| |||||||
Sbjct 1524 TCCTGCTCTTCCACA 1510
Score = 179 bits (198), Expect = 1e-40
Identities = 184/237 (78%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 38186 CGGTATCTACCTCACCAACTACGAGAGCGTTCGCGATGGAAAGCTCGACCCGAC-ACTG- 38243
||| |||||| |||| |||||||||||||| ||||| || |||| ||| | || |
Sbjct 3194 CGGCATCTACGTCACGAACTACGAGAGCGTGCGCGACGGCCGCCTCG--CCGTCGACGGC 3137
Query 38244 TTCACGGCCGTCTCACTCGACGAGGCGAGCGTGCTGCGCTCGTTCGGGTCCAAGACGTAC 38303
||| || ||| ||||||||||| |||||||||||| ||||| || ||||| |||
Sbjct 3136 TTCGACGCGGTCAGCCTCGACGAGGCATCCGTGCTGCGCTCCTTCGGATCGAAGACCTAC 3077
Query 38304 CAGTCGTTCCTCGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGCCACCGCCACACCC 38363
||| |||||||| |||||||||| | | || ||||| | ||| |||||||| || ||
Sbjct 3076 CAGGAGTTCCTCGGCCTGTTCGACGAGATCCCGTACCGCTTCGTGGCCACCGCGACGCCG 3017
Query 38364 TCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGCTATCTCGGGGTGATGGAC 38420
|| || |||||| |||||||||||||||||||||| || | ||||| | ||||||
Sbjct 3016 TCACCCAACCGGCACAAGGAGCTGATCCACTACGCCGGGTTCCTCGGCCTCATGGAC 2960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143087113362780
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |