Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq80997 264 1e-65 seq95291 246 4e-60 seq13836 127 2e-24 seq78999 107 2e-18 seq55772 104 3e-17 seq221580 102 1e-16 seq76780 84.2 3e-11 >seq80997 Length=4773 Score = 264 bits (292), Expect = 1e-65 Identities = 327/441 (74%), Gaps = 6/441 (1%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 |||||||| ||| ||||| |||| | |||||||| || | || ||||| ||||| || Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||| ||||| | | |||| || ||||| || || ||||||| ||||||| || Sbjct 4396 ATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCC 4454 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| || || || || || || ||||| || || |||| || || | ||||| ||||| Sbjct 4455 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 4514 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 |||||||||||||| || ||||| ||||| ||||| ||| | || || ||||| || Sbjct 4515 TATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGAT 4574 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 |||||||||||||||| | ||||||||| | ||||| || ||||||| |||| || | Sbjct 4575 CTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGT 4634 Query 177897 CTTCCACTTCCTGATCG--GTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTAC 177954 | |||||| | | | ||| || ||| |||||||||||||||||||||||| || Sbjct 4635 TCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGTTTT 4692 Query 177955 CGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCT 178014 || || ||||||||||| ||||| ||| ||||| | |||| || | || || || Sbjct 4693 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACT 4752 Query 178015 GCTGTATTCCTTGTTTATCCT 178035 |||| ||| | | |||||| Sbjct 4753 ACTGTTTTCTTGATCTATCCT 4773 >seq95291 Length=6073 Score = 246 bits (272), Expect = 4e-60 Identities = 306/413 (74%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 177589 TGGGAACAATTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTC 177648 |||| || |||||||| ||| ||||| || | | |||||||| || | || ||||| Sbjct 6070 TGGGGTCACTTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTT 6011 Query 177649 GGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGT 177707 | ||| ||||||| ||||| | | |||| | ||||| || || ||||||| | Sbjct 6010 GATGTTTTGATGATTCCTACTTTATTGACTGCAAAT-TCTGTATTTATTATCGCTTTTAT 5952 Query 177708 CGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTA 177767 |||||| ||||| || || || || || || ||||| | || |||| || || | || Sbjct 5951 CGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTA 5892 Query 177768 TGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTT 177827 ||| ||||| ||||||| |||||| || ||||| ||||| ||||| ||| | || || Sbjct 5891 TGGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTT 5832 Query 177828 CTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCA 177887 ||||| |||||||||||||||||| | ||||||||| | ||||| || ||||||| | Sbjct 5831 TTATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGA 5772 Query 177888 ACTCGTTATCTTCCACTTCCTGATCGGTAT--CTATGCATACATGGGTCGTGAGTGGGAA 177945 ||| || | | |||||| | | ||| | || ||| ||||||||||||||||||||| Sbjct 5771 ACTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAA 5714 Query 177946 CTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCC 177998 ||| || || || ||||||||||| ||||| ||| ||||| || ||||| Sbjct 5713 CTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661 >seq13836 Length=10167 Score = 127 bits (140), Expect = 2e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 179118 GGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTT 179177 || || || ||| ||||||| || ||||||||||| |||| | ||||| |||||| | Sbjct 4470 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGGTTCATGTTA 4529 Query 179178 CGGCAGTTTGAAATCGCACG-TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTC 179236 || || |||||| | || || ||| || | | || ||||| ||||||| ||| || || Sbjct 4530 CGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAACCGCATTCTC 4588 Query 179237 TGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTG 179296 |||||||||||||| ||||| | ||| || || || ||||| || || ||||| || Sbjct 4589 AGGTCCAATTGCTGTTTTTGTTTTTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTG 4648 Query 179297 GTTCTTTGCGCC 179308 ||||||||| || Sbjct 4649 GTTCTTTGCTCC 4660 >seq78999 Length=659 Score = 107 bits (118), Expect = 2e-18 Identities = 210/308 (68%), Gaps = 2/308 (1%) Strand=Plus/Minus Query 179544 AACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTC 179603 || || || ||||| | |||||| | || ||| |||||| ||||| ||| || | Sbjct 321 AATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACGTT-C 263 Query 179604 TTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTT 179663 | |||||| ||||| || || | ||| | ||| | || |||| | || || | Sbjct 262 TGTATGTTATTTGTACCAGTAACTGGTTTACGGATCATTACTTTTGGGGTAGTTAGTTTG 203 Query 179664 GCACTTAACCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCT 179723 || || ||||| | ||||||||||||||||| |||| || | | ||||| |||||| Sbjct 202 GCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATCCT 143 Query 179724 GAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATG 179783 | || ||||| ||||| ||||| | || | || || |||||| | |||| |||||| Sbjct 142 TA-TTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTGGGTGGATG 84 Query 179784 GCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGC 179843 | | ||| | | ||||||||| || |||| || |||| || | ||| || Sbjct 83 GGAGTTCAAGATTAGCTTCATGAAAACCTTATATTCGCTAAAGAGGTTCTACCACATGGA 24 Query 179844 AACGCTCT 179851 ||| |||| Sbjct 23 AACACTCT 16 >seq55772 Length=6464 Score = 104 bits (114), Expect = 3e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 176172 TATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGT 176231 || ||||| ||||| || ||||| || ||||||||||| |||||||||||||| || Sbjct 1368 TACATTCTAGATGCAGCAGAGGATGCTGGAGTTGAACTTCCTTACTCGTGCCGCGCCGGA 1309 Query 176232 GCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCG 176291 || || || | ||||| || || | | || || | || ||||| ||| || Sbjct 1308 GCATGCTCTACCTGTGCTGGGAAGATTGTTTCTGGTTCAGTGGATCAGTCTGATGGCTCA 1249 Query 176292 TTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTACG 176351 ||||||||||| ||| || | | ||| || | || || ||||| || ||||| || Sbjct 1248 TTCCTTGATGACACCCAAATGGGAGAAGGATTTCTACTTACCTGTGTCTCCTATCCAACT 1189 Query 176352 AGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTTTATTGA 176396 |||||||| ||||| ||| | || |||| ||||| || ||| Sbjct 1188 GCAGATTGTGTAATTGAAACTCACAAGGAAGGAGAACTCTACTGA 1144 Score = 100 bits (110), Expect = 3e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 176172 TATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGT 176231 || ||||| ||||| || ||||| || ||||||||||| |||||||||||||| || Sbjct 3836 TACATTCTAGATGCAGCAGAGGATGCTGGAGTTGAACTTCCTTACTCGTGCCGCGCCGGA 3777 Query 176232 GCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCG 176291 || || || | ||||| || || | | || || | | ||||| ||| || Sbjct 3776 GCATGCTCTACCTGTGCTGGGAAGATTGTATCTGGTTCATTGGATCAGTCTGATGGCTCA 3717 Query 176292 TTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTACG 176351 ||||||||||| ||| || | | ||| || | || || ||||| || ||||| || Sbjct 3716 TTCCTTGATGACACCCAAATGGGAGAAGGATTTCTACTTACCTGTGTCTCCTATCCAACT 3657 Query 176352 AGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTTTATTGA 176396 |||||||| ||||| ||| | || |||| ||||| || ||| Sbjct 3656 GCAGATTGTGTAATTGAAACTCACAAGGAAGGAGAACTCTACTGA 3612 >seq221580 Length=2368 Score = 102 bits (112), Expect = 1e-16 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 176161 CTGACGATCAGT-ATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCG 176219 |||| || |||| | ||||||||| | ||||| || || ||| | ||||| ||||| Sbjct 1574 CTGATGA-CAGTTACATTCTGGATTCAGCTGAAGAGGCTGGATTGGAACTACCATACTCA 1632 Query 176220 TGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAA 176279 ||| | ||||| || || || | |||||| |||| ||| || || | || ||||| Sbjct 1633 TGCAGAGCTGGAGCATGCTCTACTTGTGCTGGAAGACTGGATTCAGGTGCTGTGGATCAG 1692 Query 176280 AGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTT 176339 |||||||| || ||||| || | ||||| || ||||| | |||| || ||||| Sbjct 1693 TCAGATCAATCTTTTCTTGAAGAACAGCAGATAGAGAAAGGTTACCTTCTCACATGTGTC 1752 Query 176340 TCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACT 176389 ||||| || || |||||||||||| | || | || || || || || Sbjct 1753 TCATACCCGACATCAGATTGTGTGATTTACACCCACAAGGAGGAAGATCT 1802 >seq76780 Length=5561 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 178991 TTCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCT 179050 ||| ||| | || || || || ||| | || ||||| || || ||||| ||| | | | Sbjct 406 TTCTTATTTAGAAGGCTGCAACTTCTTAACCGCTGCAGTTTCCACTCCCGCTAATAGTTT 347 Query 179051 CGGACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCT 179110 | ||| || | | | || |||||||| ||||| |||||| |||| | | ||| Sbjct 346 AGCACACTCTTTGTTGATACTGTGGGGTCCTGAAGCACAGGGAAATTTTACCTGTTGGTG 287 Query 179111 CCAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTT 179170 || | || || || ||| ||||||| || |||||||||| |||| | |||||||| Sbjct 286 TCAGTTAGGCGGTCTGTGGACTTTTGTTGCTTTCCACGGTGCTTTCGGATTAATAGGTTT 227 Query 179171 CATGCTTCGGCAGTTTGAA 179189 |||| | || | |||||| Sbjct 226 CATGTTACGTTAATTTGAA 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594637278955600