Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq80997 219 5e-52 seq95291 192 7e-44 seq78999 96.9 4e-15 >seq80997 Length=4773 Score = 219 bits (242), Expect = 5e-52 Identities = 314/439 (72%), Gaps = 4/439 (1%) Strand=Plus/Plus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 |||||||| ||| ||||| ||| || || ||||| || | || ||||| || || || Sbjct 4336 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4395 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 ||||| || | || | ||||| || || || ||||| || |||| ||| || Sbjct 4396 ATGATTCCTACTTTATTGACTGCAACTTCTGTATTTATTATCGCTTTTATCGCTGCCCCT 4455 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || || || || || || || || || ||| |||| ||||| | ||||| ||||| Sbjct 4456 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAAT 4515 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 ||||| |||||||| || | || |||| || || ||| | || || ||||| ||| Sbjct 4516 ATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATC 4575 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 ||||||||||| | | ||||| ||||| |||||||| ||||||| |||| |||| Sbjct 4576 TGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAACTAATTGTT 4635 Query 169652 TTCCACTTCCTCATCG--GCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATC 169709 | |||||| | | | | | || ||| ||||||||||||||||||||| | | || Sbjct 4636 CTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGTTTTC 4693 Query 169710 GTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCG 169769 ||||||||||||| |||||||| |||||| || | |||| |||| || || | Sbjct 4694 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTCTTGTTGTAGCCGCTACTA 4753 Query 169770 CTGTTTTCCTGGTCTACCC 169788 |||||||| || |||| || Sbjct 4754 CTGTTTTCTTGATCTATCC 4772 >seq95291 Length=6073 Score = 192 bits (212), Expect = 7e-44 Identities = 292/412 (71%), Gaps = 4/412 (1%) Strand=Plus/Minus Query 169343 TGGGAACAATTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTC 169402 |||| || |||||||| ||| ||||| || || || ||||| || | || ||||| Sbjct 6070 TGGGGTCACTTCTGTAATTGGATAACCAACATCGAAAATCGTCTTTACATTGGATGGTTT 6011 Query 169403 GGCGTCCTGATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATC 169462 | || ||||||| || | || | |||| || || || ||||| || ||| Sbjct 6010 GATGTTTTGATGATTCCTACTTTATTGACTGCAAATTCTGTATTTATTATCGCTTTTATC 5951 Query 169463 GGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTAT 169522 | ||| || || || || || || || || || || | ||| |||| ||||| | ||| Sbjct 5950 GCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGATCTCTACTTTAT 5891 Query 169523 GGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTC 169582 || ||||| ||||| | |||||| || | || |||| || || ||| | || || Sbjct 5890 GGAAACAATATCATTTTTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTT 5831 Query 169583 TATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAA 169642 ||||| |||||||||||||| | | ||||| ||||| |||||||| ||||||| || Sbjct 5830 TATCCGATCTGGGAAGCAGCTTCTGTTGATGAGTGGTTATACAACGGCGGTCCTTATGAA 5771 Query 169643 CTGGTTGTCTTCCACTTCCTCATCG--GCATCTATGCTTACATGGGTCGTGAGTGGGAAT 169700 || |||| | |||||| | | | | | || ||| ||||||||||||||||||||| Sbjct 5770 CTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAAC 5713 Query 169701 TGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCC 169752 | | ||||||||||||||| |||||||| |||||| || || ||||| Sbjct 5712 TTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 5661 >seq78999 Length=659 Score = 96.9 bits (106), Expect = 4e-15 Identities = 212/315 (67%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 171298 CTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATT 171357 ||||||| || ||||| | || ||| | || ||| |||||| ||||||| | || Sbjct 323 CTAATCGCTTTTGGTCATAAATCTTTAAGGTTGCTTTCTTCAATAAATGTTGGTTACGTT 264 Query 171358 TCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTC 171417 || |||| | ||||| || || | ||| | || ||| || | | ||| | || || Sbjct 263 -CTGTATGTTATTTGTACCAGTAACTGGTTTACGGATCATTACTTTTGGGGTAGTTAGTT 205 Query 171418 TTGCTCTTAATCTTAGGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATC 171477 | || || || || | |||||||| || || | | || | | | ||||||||||| Sbjct 204 TGGCCCTAAACCTACGTGCTTATGACTTTGTTTCTAAAGAAATTCGTGGAGCAGAAGATC 145 Query 171478 CAGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGA 171537 | | || ||||| ||||| ||||| | || | || || |||||| |||||| |||| Sbjct 144 CTTA-TTTGAGACTTTCTACACCAAAAGTATTTTCTTAAACGAAGGTATTCGTGGGTGGA 86 Query 171538 TGGCACCAGTAGACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTG 171597 ||| | ||| | | ||||||||| || | ||| | | || |||||||| | || Sbjct 85 TGGGAGTTCAAGATTAGCTTCATGAAAACCTTATATTCGCTAAAGAGGTTCTACCACATG 26 Query 171598 GCAATGCACTTTGAT 171612 | || | |||| || Sbjct 25 GAAACACTCTTTAAT 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590539985393200