Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687 525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq54380 125 7e-24 seq78764 114 1e-20 seq67758 109 5e-19 seq44648 87.8 2e-12 seq39107 82.4 7e-11 >seq54380 Length=3212 Score = 125 bits (138), Expect = 7e-24 Identities = 154/207 (74%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 ||||||| |||||||| | || || || || ||| ||||||||| ||||| ||||||| Sbjct 2234 CGCCGCCACGTAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 2175 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||||||| |||| ||||||||||| |||||||| || || ||||| || |||| | Sbjct 2174 CGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGCG 2115 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGA-CGACACAGTGTCGCTCGACTC 41811 | | | |||||||||| ||| || ||||| | | || | ||||| ||||| Sbjct 2114 GGATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCG--ATTGTGTCCGAAGACTC 2057 Query 41812 CACCTCCACCGTTATCGTTTTACCCGT 41838 ||||| | || || ||||| ||||| Sbjct 2056 AACCTCAAGGGTAATGGTTTTCCCCGT 2030 >seq78764 Length=1181 Score = 114 bits (126), Expect = 1e-20 Identities = 142/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 41674 CTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATAT 41733 |||||| ||||| ||||||| ||||||||| | || ||||||||||| |||||||| || Sbjct 416 CTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGAT 357 Query 41734 CAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGA-C 41791 || ||||| || |||| |||| | |||||||||| ||| || ||||| | | | Sbjct 356 GAGACGCTGCTGATCCGGCGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTATC 297 Query 41792 GACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| ||||| ||||| | || || || || ||||| || || || ||| Sbjct 296 G--ATTGTGTCCGAAGACTCAACCTCAAGGGTAATGGTCTTCCCCGTAAGGGTTTTCACG 239 Query 41852 AAAATCTGCAT 41862 || |||||||| Sbjct 238 AATATCTGCAT 228 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| || || | || || || || ||| ||||||||| ||||| ||||||| | Sbjct 545 CCGCCGCGGAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 486 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAG 41736 |||||||| |||| ||||||||||| |||||||| || || Sbjct 485 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAG 445 >seq67758 Length=6344 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||| || || ||||| | Sbjct 5123 CCACCACGAAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCA 5064 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | | | || || | |||||| || ||||| ||||| | ||| ||||||| |||| Sbjct 5063 AGGGTCCTCCCATCTTCCAACTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCCGGGGGA 5004 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814 | | |||||||||| ||| |||| || | || | || | |||| ||| || Sbjct 5003 ATTCCCTCCTTGTCC-TGAATTTTCGCCTTCACATTGTCAATGGTGTCAGAACTCTCAAC 4945 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || || |||| ||||| || |||||||||||| Sbjct 4944 CTCCAGAGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAAATCTGCATG 4896 >seq44648 Length=6574 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || ||| ||||||||||||||| || || | || || || | || || Sbjct 5519 ACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCCAGAGTACGTCCATCCTCA 5460 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || || || |||| | || || || | |||| || |||||||||| || Sbjct 5459 AGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCTGGAGGAATGCCCTCCTTGTCC-TG 5401 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | ||||| | || | | | ||||| ||| ||||||| || || ||||| Sbjct 5400 TATCTTTGCCTTCACATTGTCAATCGTGTCTGAACTCTCGACCTCCAAAGTAATAGTTTT 5341 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || ||||| || ||||||||||| Sbjct 5340 TCCAGTAAGAGTCTTGACAAAAATCTGCAT 5311 >seq39107 Length=55737 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | || |||| ||||| || || ||||| |||||||| || | Sbjct 16778 GCCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCTTTCTGGATGTTATAATCCGC 16719 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | || || ||||| || ||||| || || || | ||| ||||| | ||| Sbjct 16718 AAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGGG 16659 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC--C 41812 || | |||||| ||| ||| | || |||| ||| || | || || |||| | Sbjct 16658 AATACCCTCCTTATCC-TGAATCTTGGCTTTAACATTATCAATG-GTATCTGAACTCTCC 16601 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| || || ||||| || |||| ||||| || || || |||||| Sbjct 16600 ACCTCCAAGGTAATAGTTTTCCCGGTCAAAGTCTTCACAAAGATTTGCATG 16550 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | || |||| ||||| || || ||||| |||||||| || | Sbjct 26552 GCCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCTTTCTGGATGTTATAATCCGC 26493 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | || || ||||| || ||||| || || || | ||| ||||| | ||| Sbjct 26492 AAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGGG 26433 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC--C 41812 || | |||||| ||| ||| | || |||| ||| || | || || |||| | Sbjct 26432 AATACCCTCCTTATCC-TGAATCTTGGCTTTAACATTATCAATG-GTATCTGAACTCTCC 26375 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| || || ||||| || |||| ||||| || || || |||||| Sbjct 26374 ACCTCCAAGGTAATAGTTTTCCCGGTCAAAGTCTTCACAAAGATTTGCATG 26324 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | || |||| ||||| || || ||||| |||||||| || | Sbjct 29875 GCCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCTTTCTGGATGTTATAATCCGC 29816 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | || || ||||| || ||||| || || || | ||| ||||| | ||| Sbjct 29815 AAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGGG 29756 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC--C 41812 || | |||||| ||| ||| | || |||| ||| || | || || |||| | Sbjct 29755 AATACCCTCCTTATCC-TGAATCTTGGCTTTAACATTATCAATG-GTATCTGAACTCTCC 29698 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| || || ||||| || |||| ||||| || || || |||||| Sbjct 29697 ACCTCCAAGGTAATAGTTTTCCCGGTCAAAGTCTTCACAAAGATTTGCATG 29647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461009346542000