Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vigna_20unguiculata_20subsp._20unguiculata_20[genbank_20GCA_5F001687
525.1_202016-07-20] 224,035 sequences; 695,045,594 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq54380 125 7e-24
seq78764 114 1e-20
seq67758 109 5e-19
seq44648 87.8 2e-12
seq39107 82.4 7e-11
>seq54380
Length=3212
Score = 125 bits (138), Expect = 7e-24
Identities = 154/207 (74%), Gaps = 4/207 (2%)
Strand=Plus/Minus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
||||||| |||||||| | || || || || ||| ||||||||| ||||| |||||||
Sbjct 2234 CGCCGCCACGTAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 2175
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753
||||||||| |||| ||||||||||| |||||||| || || ||||| || |||| |
Sbjct 2174 CGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGCG 2115
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGA-CGACACAGTGTCGCTCGACTC 41811
| | | |||||||||| ||| || ||||| | | || | ||||| |||||
Sbjct 2114 GGATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCG--ATTGTGTCCGAAGACTC 2057
Query 41812 CACCTCCACCGTTATCGTTTTACCCGT 41838
||||| | || || ||||| |||||
Sbjct 2056 AACCTCAAGGGTAATGGTTTTCCCCGT 2030
>seq78764
Length=1181
Score = 114 bits (126), Expect = 1e-20
Identities = 142/191 (74%), Gaps = 4/191 (2%)
Strand=Plus/Minus
Query 41674 CTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATAT 41733
|||||| ||||| ||||||| ||||||||| | || ||||||||||| |||||||| ||
Sbjct 416 CTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGAT 357
Query 41734 CAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGA-C 41791
|| ||||| || |||| |||| | |||||||||| ||| || ||||| | | |
Sbjct 356 GAGACGCTGCTGATCCGGCGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTATC 297
Query 41792 GACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
| | ||||| ||||| ||||| | || || || || ||||| || || || |||
Sbjct 296 G--ATTGTGTCCGAAGACTCAACCTCAAGGGTAATGGTCTTCCCCGTAAGGGTTTTCACG 239
Query 41852 AAAATCTGCAT 41862
|| ||||||||
Sbjct 238 AATATCTGCAT 228
Score = 93.3 bits (102), Expect = 4e-14
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|||||||| || || | || || || || ||| ||||||||| ||||| ||||||| |
Sbjct 545 CCGCCGCGGAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 486
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAG 41736
|||||||| |||| ||||||||||| |||||||| || ||
Sbjct 485 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAG 445
>seq67758
Length=6344
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || ||| ||||||||| || || ||||| |
Sbjct 5123 CCACCACGAAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCA 5064
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| | | | || || | |||||| || ||||| ||||| | ||| ||||||| ||||
Sbjct 5063 AGGGTCCTCCCATCTTCCAACTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCCGGGGGA 5004
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814
| | |||||||||| ||| |||| || | || | || | |||| ||| ||
Sbjct 5003 ATTCCCTCCTTGTCC-TGAATTTTCGCCTTCACATTGTCAATGGTGTCAGAACTCTCAAC 4945
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| || || || || || |||| ||||| || ||||||||||||
Sbjct 4944 CTCCAGAGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAAATCTGCATG 4896
>seq44648
Length=6574
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|| ||||| || ||| ||||||||||||||| || || | || || || | || ||
Sbjct 5519 ACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCCAGAGTACGTCCATCCTCA 5460
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
|||||||| || || || |||| | || || || | |||| || |||||||||| ||
Sbjct 5459 AGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCTGGAGGAATGCCCTCCTTGTCC-TG 5401
Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832
| ||||| | || | | | ||||| ||| ||||||| || || |||||
Sbjct 5400 TATCTTTGCCTTCACATTGTCAATCGTGTCTGAACTCTCGACCTCCAAAGTAATAGTTTT 5341
Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || ||||| || |||||||||||
Sbjct 5340 TCCAGTAAGAGTCTTGACAAAAATCTGCAT 5311
>seq39107
Length=55737
Score = 82.4 bits (90), Expect = 7e-11
Identities = 159/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || || | || |||| ||||| || || ||||| |||||||| || |
Sbjct 16778 GCCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCTTTCTGGATGTTATAATCCGC 16719
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||| | | || || ||||| || ||||| || || || | ||| ||||| | |||
Sbjct 16718 AAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGGG 16659
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC--C 41812
|| | |||||| ||| ||| | || |||| ||| || | || || |||| |
Sbjct 16658 AATACCCTCCTTATCC-TGAATCTTGGCTTTAACATTATCAATG-GTATCTGAACTCTCC 16601
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||||| || || ||||| || |||| ||||| || || || ||||||
Sbjct 16600 ACCTCCAAGGTAATAGTTTTCCCGGTCAAAGTCTTCACAAAGATTTGCATG 16550
Score = 82.4 bits (90), Expect = 7e-11
Identities = 159/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || || | || |||| ||||| || || ||||| |||||||| || |
Sbjct 26552 GCCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCTTTCTGGATGTTATAATCCGC 26493
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||| | | || || ||||| || ||||| || || || | ||| ||||| | |||
Sbjct 26492 AAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGGG 26433
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC--C 41812
|| | |||||| ||| ||| | || |||| ||| || | || || |||| |
Sbjct 26432 AATACCCTCCTTATCC-TGAATCTTGGCTTTAACATTATCAATG-GTATCTGAACTCTCC 26375
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||||| || || ||||| || |||| ||||| || || || ||||||
Sbjct 26374 ACCTCCAAGGTAATAGTTTTCCCGGTCAAAGTCTTCACAAAGATTTGCATG 26324
Score = 82.4 bits (90), Expect = 7e-11
Identities = 159/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || || | || |||| ||||| || || ||||| |||||||| || |
Sbjct 29875 GCCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCTTTCTGGATGTTATAATCCGC 29816
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||| | | || || ||||| || ||||| || || || | ||| ||||| | |||
Sbjct 29815 AAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGGG 29756
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC--C 41812
|| | |||||| ||| ||| | || |||| ||| || | || || |||| |
Sbjct 29755 AATACCCTCCTTATCC-TGAATCTTGGCTTTAACATTATCAATG-GTATCTGAACTCTCC 29698
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||||| || || ||||| || |||| ||||| || || || ||||||
Sbjct 29697 ACCTCCAAGGTAATAGTTTTCCCGGTCAAAGTCTTCACAAAGATTTGCATG 29647
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461009346542000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |