Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq681135 176 5e-39 seq5092 93.3 5e-14 >seq681135 Length=1827 Score = 176 bits (194), Expect = 5e-39 Identities = 398/590 (67%), Gaps = 20/590 (3%) Strand=Plus/Plus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || |||||||||||||||| |||||||||| ||||| || || || || || Sbjct 565 CAAGCACGCGAAATCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGT 624 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 24249 | ||| ||||| || || || || || ||||| ||||| || ||| | | | || || | Sbjct 625 TAATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGA-GCAGAAGCTTCCGGAGA 683 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGT 24306 |||| || ||||| || || || || | || | ||| || | ||| || || Sbjct 684 AGAAGATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGT 743 Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 | ||||| ||||||| | ||| ||||| ||||| || || || || || | Sbjct 744 CG---ATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTG 800 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | | |||||| |||||| || || ||| || | ||| | || | ||| ||||| | Sbjct 801 CGTGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGT 860 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 |||| || || || |||||||||||||| || |||||||| ||||| | |||||||| Sbjct 861 ACATCTCAGAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGG 920 Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 | ||| || || | || | | | || | |||||| || ||||||||| | Sbjct 921 AGACCTGGACCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATTCCGTCAGAAG 980 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CTGGTGTTAGTTTATT 24604 | || || || || | | ||| | || || | || |||| |||||| || || || Sbjct 981 CGGCGAAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTG--AGGTT-TT 1037 Query 24605 CCAATCATTGA----TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 24660 || |||||| || | ||| | || ||||| || | |||||||| || |||| Sbjct 1038 CC---CATTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCGGTCCAAAACGACGCCT 1094 Query 24661 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 | ||||| || ||||| | ||||| || | || ||||| || || ||| Sbjct 1095 CGGCCTTCTTGTACATTTCCCAGACTGCAGGGTACTGAATCGGGAACATA 1144 >seq5092 Length=1596 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| ||||| || | || || ||||| || || ||||| | ||| | || || | Sbjct 848 GTTCCTGCATTGAAAAGAGTGGGTGAAGCATGAGTGAACCAACGCTGAGACATTAAATGG 789 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || | |||||| || || || || | ||| |||||||| || | || | ||| || Sbjct 788 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACTCTCATCAA 730 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||||||||| ||||| || | ||| | || ||||| | ||||| | || | Sbjct 729 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGATAGGACCTCTCAAG 670 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||| |||||||| || | || |||||| || || ||||| || Sbjct 669 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCGGTCATAAATGAT 622 Score = 82.4 bits (90), Expect = 9e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | || | || |||| ||| | || | | ||| |||| ||| || Sbjct 1264 TCCTCCTTGATCAACATAACGGGCAGTGTCATTGAACACCCGTAGCATAGGAACAATGCC 1205 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 |||||||| ||||| || || ||||| ||||| |||||||||| ||| || || Sbjct 1204 ATTGGATGTCCCATTTGTTCCACGAATATAACTTCCTGTGGCACGAATGTTATGAACAGA 1145 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || || ||| | || || |||| || ||||| || Sbjct 1144 AACACCAATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTTAGAGTGTCATATAT 1085 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 || || ||||||||||| ||||| || || || |||||| Sbjct 1084 TCCTTCAATACTATCATCTTTCATGCAAATAAGGAAGCAGCTA 1042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588110003190000