Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq681135 241 1e-58 seq726932 149 6e-31 seq620935 140 3e-28 seq750760 125 7e-24 seq313781 107 2e-18 seq109077 98.7 1e-15 seq736048 87.8 2e-12 >seq681135 Length=1827 Score = 241 bits (266), Expect = 1e-58 Identities = 517/764 (68%), Gaps = 9/764 (1%) Strand=Plus/Minus Query 116603 CGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAG 116662 |||||| || ||||| || || ||||| | | ||| |||||||| ||||||||| Sbjct 1152 CGGTTCTGTATGTTCCCGATTCAGTACCCTGCAGTCTGGGAAATGTACAAGAAGGCCGAG 1093 Query 116663 GCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGC 116722 |||||||| ||||||| |||||| || ||||| || ||||| | | | ||||| | Sbjct 1092 GCGTCGTTTTGGACCGCCGAGGAAGTCGACCTCTCTCAGGACCAGCGTCAATGGGAAAAC 1033 Query 116723 TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGAC 116782 | | | | ||||| || ||||||| || | || ||||| |||||||| ||| Sbjct 1032 CTCACCAGCGACGAGAAGCACTTCATCAGTCATATCCTTGCCTTCTTCGCCGCTTCTGAC 973 Query 116783 GGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCG 116842 || |||||| ||| ||||| | || | ||| ||||||| ||||| ||||||| Sbjct 972 GGAATCGTCCTCGAAAATCTCGCCGGAAGGTTCATGAAGGAGGTCCAGGTCTCCGAGGCT 913 Query 116843 CGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC 116902 || |||||| || |||||||| ||||| || ||| | ||||| || ||||| Sbjct 912 CGTGCCTTCTATGGATTTCAGATTGCCATTGAAAACATCCACTCTGAGATGTACAGTCTG 853 Query 116903 CTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAG 116962 | | || |||| | | | ||||||| | | | || |||| ||||| Sbjct 852 TTGTTAGAATCGTATATCAAGGATCCAAAGGAGAAAAACAGGCTCTTTCACGCAATCGAT 793 Query 116963 ACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAG 117022 || || || || || |||| ||| ||||||| || || ||||||| |||| || Sbjct 792 ACCATCCCCTGTGTGGCGAAGAAAGCCCAGTGGGCTCTCCGATGGATCGACGGCTCCGA- 734 Query 117023 GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGC 117082 |||| | ||| |||||| | || ||||| ||| || ||| ||||||| || || Sbjct 733 --AACCTTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGA 676 Query 117083 AGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGC 117142 || ||| | | ||||| ||||| ||||||||||| |||||||| || | |||||| Sbjct 675 AGCTTCTGCTCGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCA 616 Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202 || ||| | ||||| | |||||||| | || ||||| || || || ||||| | || Sbjct 615 AATGAGTTAATCTCGCGAGACGAGGGCTTACACTGCGATTTCGCGTGCTTGCTCTACAGC 556 Query 117203 C-ATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261 | | || | | | || |||| || | | || | || |||||| ||||| |||| | Sbjct 555 CTACTTAG-GAATAAACTAAGCGAGGAGAGAGTGAAGGCAATCGTCGCCGACTCGGTGGA 497 Query 117262 CATCGAGCAGCG-CTTCCTCACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGC 117319 || || || | ||| || ||| ||| | || ||||| ||| |||| | || | Sbjct 496 TATAGA-AAGAGAGTTCGTCTGCGACGCGTTACC-GTGCGCTCTAGTGGGGATGAACAGT 439 Query 117320 GAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCT 117363 | ||| ||||||||||| ||||| ||||| | ||||| Sbjct 438 GCTCTAATGAGTCAATACATCGAATTCGTTGCCGATCGCCTGCT 395 >seq726932 Length=530 Score = 149 bits (164), Expect = 6e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| || ||||| || ||||| ||| | || || ||| | Sbjct 252 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATCG 193 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||| || |||||||| ||||| Sbjct 192 TCTGACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 133 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || ||||||| ||| || ||||||||||| |||| || ||||| ||||||| Sbjct 132 CAGCAGCGTCTCATCTTCGCTGGAAAACAGCTGGAGGACGGCCGAACCCTAGCCGACTAC 73 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||||| | || || || || ||| | ||| | | || |||| Sbjct 72 AACATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCGCCTCCGTGGTGGCG 21 >seq620935 Length=1758 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || ||||| ||| | || || ||| | Sbjct 252 AAGATGCAGATTTTCGTGAAGACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATCA 193 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | |||||| || || | ||||| || |||||||| ||||| Sbjct 192 TCTGACACGATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCGCCGGAC 133 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || ||||||| ||| |||||||||||||| |||| || ||||| ||||||| Sbjct 132 CAGCAGCGCCTCATCTTCGCTGGCAAACAGCTGGAGGACGGCCGAACCCTAGCCGACTAC 73 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 || |||||||||||| | || || || || ||| | ||| | | || |||| Sbjct 72 AATATCCAGAAGGAGTCAACCCTCCACCTGGTGCTCCGCCTCCGTGGTGGCG 21 >seq750760 Length=1299 Score = 125 bits (138), Expect = 7e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| || ||||| || ||||| ||| | || || || || Sbjct 132 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCCTTGAGGTGGAGTCC 191 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | ||||| || ||||| || ||||| Sbjct 192 TCTGACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGAC 251 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||||| ||||| | ||| || || ||||| || |||| || ||||| |||||| Sbjct 252 CAGCAACGCCTCATATTCGCCGGGAAGCAGCTCGAGGACGGCCGGACCCTAGCTGACTAC 311 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||||| | || || || | ||| | ||| | || || |||| Sbjct 312 AACATCCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGCCTCAGAGGTGGCG 363 >seq313781 Length=385 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || |||||||| | || || || || Sbjct 194 ATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATCACGCTGGAGGTGGAGAGTTCC 253 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | ||| |||| ||||| ||||| ||||| |||| ||| Sbjct 254 GACACCATTGATAATGTCAAAGCAAAGATTCAGGACAAGGAGGGGATCCCACCGGATCAG 313 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| || || |||||||| || | | | ||||| ||||||||| Sbjct 314 CAGAGGCTGATCTTCGCCGGGAAGCAGCTGGAAGATGGGAGGACCCTGGCGGACTACAAC 373 Query 40870 ATCCAGAAGGAG 40881 |||||||||||| Sbjct 374 ATCCAGAAGGAG 385 >seq109077 Length=726 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || |||||||| | || || || || Sbjct 192 ATGCAAATCTTCGTGAAGACTCTGACTGGGAAGACCATCACGCTGGAGGTGGAGAGTTCC 133 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | || | ||| |||| ||||| || || ||||| |||| ||| Sbjct 132 GACACCATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAAGGGATCCCACCGGATCAG 73 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| || || |||||||| || | | | ||||| ||||||||| Sbjct 72 CAGAGATTGATCTTCGCTGGGAAGCAGCTGGAAGATGGGAGGACCCTGGCGGACTACAAC 13 Query 40870 ATCCAGAAGGAG 40881 |||||||||||| Sbjct 12 ATCCAGAAGGAG 1 >seq736048 Length=1016 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || ||||| || ||| | || || || | Sbjct 635 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATTACCCTTGAAGTTGAGAGTTCA 576 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | || | ||||| | ||||| ||||| || ||| | |||||| Sbjct 575 GACACCATCGATAATGTGAAAGCTAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 516 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||| | || || ||||||||||| || | || || | ||||||||| Sbjct 515 CAGAGGCTCATATTTGCTGGTAAACAGCTGGAAGATGGTCGGACATTGGCGGACTACAAC 456 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| | || || || | || | || ||||| || ||| Sbjct 455 ATCCAGAAGGAATCTACCCTTCACTTGGTTCTCCGTTTGAGAGGTGGC 408 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || ||||| |||||| | || || || | | Sbjct 863 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAAGTTGAGAGCTCA 804 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | |||||| | ||||| ||||| || ||| | |||||| Sbjct 803 GACACCATTGATAATGTCAAAGCAAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 744 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | || || || ||||| || || | || || | || || ||| Sbjct 743 CAGAGGCTTATATTTGCTGGTAAGCAGCTCGAGGATGGCCGGACATTGGCTGATTATAAC 684 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| |||| || || | || | || || || |||||| Sbjct 683 ATCCAGAAAGAGTCCACCCTTCACTTGGTTCTCCGTTTAAGAGGCGGC 636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510349573530000