Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq736048 113 7e-20 seq611781 98.7 1e-15 seq113432 98.7 1e-15 seq656108 86.0 9e-12 >seq736048 Length=1016 Score = 113 bits (124), Expect = 7e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | ||||| || || || |||||||| || | ||| |||| || | Sbjct 407 ATGCAAATATTTGTGAAGACCCTTACTGGTAAAACTATCACCCTTGAGGTTGAGAGTTCA 348 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| | ||| ||||| || || || |||||||| ||||| || || Sbjct 347 -GACACCATCGACAATGTGAAAGCAAAAATCCAGGACAAGGAAGGTATTCCACCCGACCA 289 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || || || |||| ||| ||||||| || | || || || Sbjct 288 GCAGAGGCTAATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGAACTTTGGCTGACTACAA 229 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || |||||||| | || | ||| | || |||| || ||||| Sbjct 228 TATACAGAAGGAATCAACCCTTCACCTTGTTCTCCGCCTACGTGGGGGTAT 178 >seq611781 Length=262 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| |||||||||| || || || || || || | ||| | ||| Sbjct 94 AATGCAAATATTTGTAAAGACACTGACTGGAAAGACCATCACGCTTGAGGTGGAAAGCTC 153 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| |||| |||||| ||||| || ||||| || || || || || Sbjct 154 TGATACAATCGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCAGACCA 213 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGAT 124694 |||||| | |||||||| ||||| || | |||||| Sbjct 214 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGAT 250 >seq113432 Length=226 Score = 98.7 bits (108), Expect = 1e-15 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| | |||||||| || || || || || || | || |||| ||| Sbjct 67 AATGCAAATATTTGTTAAGACACTCACCGGAAAGACCATCACCCTTGAAGTTGAGAGCTC 126 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | |||||| || ||| |||| |||||| ||||| || ||||| || || ||||| | Sbjct 127 A-GATACAGTTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGACC 185 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGAT 124694 | |||||| | |||||||| ||||| || | |||||| Sbjct 186 AGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGAT 223 >seq656108 Length=2760 Score = 86.0 bits (94), Expect = 9e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 205449 ATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACC 205508 ||| |||||||| | ||||||||| |||| ||||| |||||||| ||||| | ||| Sbjct 1349 ATGAGCAATCATGCATGTCAATAAAGCATAAGAAGCAATGTTAAATGGCACACCAAGACC 1408 Query 205509 CATATCAGCTGATCTTTGATACATTTGACA 205538 ||||||||| || | |||||||||||||| Sbjct 1409 CATATCAGCAGAGCGCTGATACATTTGACA 1438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 748315760400000