Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq109077 138 1e-27 seq702768 125 6e-24 seq736048 122 7e-23 seq689433 120 3e-22 seq750760 113 4e-20 seq726932 113 4e-20 seq313781 109 5e-19 seq620935 104 2e-17 seq662336 86.0 5e-12 >seq109077 Length=726 Score = 138 bits (152), Expect = 1e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| ||||||||||| |||||||||||||| | ||| ||| |||||| Sbjct 211 CACCAAGTGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGCAAGAGTTCGCCCATCCTC 270 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| | || | | |||||| || || || || ||||||||||| Sbjct 271 AAGCTGCTTGCCCGCGAAAATCAACCTCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTG 330 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || ||| || | |||| ||| |||| |||||| ||||| | ||| | || || Sbjct 331 AATCTTCGCTTTCACATTGTCGATGGTATCCGAGCTCTCAACCTCTAAGGTAATTGTCTT 390 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| || | ||| || || || ||||||||| Sbjct 391 GCCAGTTAAAGTCTTCACGAAGATCTGCATG 421 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||| |||||||| |||||||||||||| | ||| || || || Sbjct 440 ACCAAGTGAAGTGTTGACTCTTTCTGAATGTTGTAATCCGCGAGAGTTCGGCCGTCTTCC 499 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| | || || | |||||| || || || ||||||||||| || Sbjct 500 AGCTGCTTCCCTGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTATCCTGG 559 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | || | |||||| | ||| |||||||| | || | || || Sbjct 560 ATCTTAGCTTTCACGTTGTCAATGGTGTCGGAGCTTTCGACCTCTAGAGTAATTGTCTTT 619 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||||||||| |||||||||||||| Sbjct 620 CCGGTCAGAGTTTTAACAAAAATCTGCAT 648 >seq702768 Length=508 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| || |||||||||||||| | ||| || |||||| Sbjct 309 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTCCGACCATCCTCC 250 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| || || || ||||||| | ||||||||| ||||| || || |||||||| | Sbjct 249 AACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGA 190 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||||| || || | || | ||||| | |||||| ||||| | || | || || Sbjct 189 ATTTTTGCCTTCACATTATCTATAGTGTCTGAGCTCTCAACCTCTAGTGTAATTGTCTTT 130 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || ||||| |||||||| Sbjct 129 CCCGTCAGGGTCTTCACAAATATCTGCAT 101 >seq736048 Length=1016 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || |||||||| || ||||| ||||| || || || ||||||| Sbjct 655 ACCAAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCCAATGTCCGGCCATCCTCG 714 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| | || || | |||||| || || || || ||||||||||| Sbjct 715 AGCTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 774 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||||| ||| || | || | |||||| | |||||| || || | ||| | ||||| Sbjct 775 ATTTTTGCTTTGACATTATCAATGGTGTCTGAGCTCTCAACTTCAAGGGTGATAGTTTTT 834 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || |||||||| |||||| Sbjct 835 CCAGTGAGGGTCTTCACAAAAATTTGCATG 864 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| || || || |||||||| || || || || ||| || Sbjct 427 ACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGCCAATGTCCGACCATCTTCC 486 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| ||||| | ||||| | |||||| || || || || ||||||||||| Sbjct 487 AGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 546 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | |||| |||||| | ||||| || || | ||| | ||||| Sbjct 547 ATTTTAGCTTTCACATTATCGATGGTGTCTGAACTCTCAACTTCAAGGGTAATAGTTTTT 606 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || |||||||| |||||| Sbjct 607 CCAGTGAGGGTCTTCACAAAAATTTGCATG 636 Score = 102 bits (112), Expect = 7e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 118560 TTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGC 118619 ||||| || || |||||| |||||| |||||||||||||| |||| || | ||| Sbjct 1 TTGTAGTCAGCCAAAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGT 60 Query 118620 TGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCC 118679 || || ||||| ||||| |||||||| ||||||| || || | || | ||||| Sbjct 61 TGGTCAGGAGGAATGCCTTCCTTGTCCTGAATTTTTGCCTTGACATTGTCAATTGTGTCT 120 Query 118680 GTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||||| || || | || | ||||| || || | || || |||||||||||||| Sbjct 121 GAGCTCTCAACTTCAAGAGTGATTGTTTTACCAGTTAAGGTCTTCACAAAAATCTGCAT 179 >seq689433 Length=414 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || |||||||||||||| | || || |||||| Sbjct 230 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGACCATCCTCC 171 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| || || ||| |||| || | ||||||||| ||||| || ||||||||||| | Sbjct 170 AACTGCTTCCCTGCGAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTCCTTGTCCTGA 111 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | || | ||| || | |||||| ||||| | || | ||| || Sbjct 110 ATTTTGGCCTTCACATTATCTATGGTATCTGAGCTCTCCACCTCTAGTGTGATCGTCTTT 51 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || ||||| |||||||| Sbjct 50 CCCGTCAGGGTCTTCACAAATATCTGCAT 22 >seq750760 Length=1299 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATCCT 118587 ||||||||||| |||||||| || || |||||||| || ||| | || || |||| Sbjct 344 CACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCT-AGGGTCCGGCCGTCCT 286 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 ||||||| || || ||| | ||||| || ||||| || ||||| ||||| |||||||| Sbjct 285 CGAGCTGCTTCCCGGCGAATATGAGGCGTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCT 226 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | |||| |||||| | | ||| ||||| | ||| | || | Sbjct 225 GGATCTTGGCCTTCACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTTATGGTCT 166 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || ||||| || || |||||||| Sbjct 165 TACCCGTTAGGGTTTTCACGAAGATCTGCAT 135 >seq726932 Length=530 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| ||| | || || ||||| Sbjct 40 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTC 99 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||||||||||||| |||||||||||||||| || || || ||||| |||||||| Sbjct 100 CAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTG 159 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| | || ||||| | ||| | || || Sbjct 160 GATCTTAGCCTTGACATTGTCGATGGTGTCAGACGATTCAACCTCTAGGGTTATGGTCTT 219 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || || |||||||| Sbjct 220 CCCCGTTAGGGTTTTCACGAAGATCTGCAT 249 >seq313781 Length=385 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | | ||||||||||| |||||||| || |||||||||||||| Sbjct 194 TACCACCGCGCAGACGAAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAG 135 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| ||| |||||| ||||| || || ||| | || || | |||||| || || | Sbjct 134 CAAGAGTTCGCCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTG 75 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || |||||||| ||| || ||| || | || | |||||| | ||| |||| Sbjct 74 GAATCCCTTCCTTGTCCTGAATCTTCGCTTTCACGTTGTCAATGGTGTCGGAGCTTTCGA 15 Query 118690 CCTCGACGGT 118699 |||| | ||| Sbjct 14 CCTCCAGGGT 5 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| || || || | | ||| || ||||| || || ||| | Sbjct 385 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCGGCGAA 326 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| || | ||||||||| || || || ||||||||||| ||| ||| ||| || | Sbjct 325 GATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGAATCTTTGCTTTGACATT 266 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 || | |||||| | ||||| ||||| | || | || || || ||||| || || || Sbjct 265 ATCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTTCCAGTCAGTGTCTTCAC 206 Query 118727 AAAAATCTGCAT 118738 || || ||||| Sbjct 205 GAAGATTTGCAT 194 >seq620935 Length=1758 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || || ||||| ||| | || || ||||| Sbjct 40 CACCAGGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGCTAGGGTTCGGCCGTCCTC 99 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| |||||| ||||||| |||||||| || || || ||||| ||||||||| Sbjct 100 CAGCTGTTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTG 159 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | |||| ||||| | || | || ||||| | ||| | || | Sbjct 160 GATCTTGGCCTTGACATTATCGATCGTGTCAGATGAT-TCAACCTCTAGGGTTATGGTCT 218 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || || || || ||||||||||| Sbjct 219 TCCCCGTTAGGGTCTTCACGAAAATCTGCAT 249 >seq662336 Length=3756 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 ||||| || | ||| | ||| ||||||||||| ||||| ||||| | |||||| | Sbjct 287 CTCAAAACAAGGTGAAGTGTGGACTCTTTTTGGATGTTATAATCTGCAAGAGTGCGACCA 228 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || || || ||||| ||||| | || | | ||||||||| ||||| ||||| |||||| Sbjct 227 TCTTCCAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAGGAATGCCTTCCTTG 168 Query 118644 TC 118645 || Sbjct 167 TC 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429832534238500