Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq736048 127 2e-24 seq750760 109 6e-19 seq620935 109 6e-19 seq726932 104 3e-17 seq313781 104 3e-17 seq109077 100 3e-16 seq702768 86.0 7e-12 >seq736048 Length=1016 Score = 127 bits (140), Expect = 2e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||||||||| | ||||| || | ||| ||| || || || || ||||||||| Sbjct 637 CCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCC 696 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||||| | || || |||||||||||||| ||||| || | ||||||||| | || Sbjct 697 AATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGGGGA 756 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | |||||||||| ||||||| ||||| | | | ||||| |||| || Sbjct 757 ATACCCTCCTTGTCCTGGATTTTTGCTTTGACATTATCAATGGTGTCTGAGCTC---TCA 813 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 814 ACTTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 863 Score = 107 bits (118), Expect = 2e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || |||||||| ||||||| ||| || | || ||||||||||||||||| || Sbjct 217 TCCTTCTGTATATTGTAGTCAGCCAAAGTTCGACCATCTTCTAGCTGCTTACCAGCAAAG 276 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || | ||||||||||| || | | ||||||||| ||||||| ||| | | Sbjct 277 ATTAGCCTCTGCTGGTCGGGTGGAATACCTTCCTTGTCCTGGATTTTTGCTTTCACATTG 336 Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | ||||| ||| || || || | ||||| ||||| || || || ||||| Sbjct 337 TCGATGGTGTCTGAACTC---TCAACCTCAAGGGTGATAGTTTTACCAGTAAGGGTCTTC 393 Query 43170 ACAAAGATTTGCAT 43183 ||||| |||||||| Sbjct 394 ACAAATATTTGCAT 407 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | ||||| || | ||| |||||| || || || ||||||||| Sbjct 865 CCACCTCTCAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCAGCC 924 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||||| | || || |||||||||||||| || || || | ||||||||| | || Sbjct 925 AATGTCCGGCCATCCTCCAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGAGGA 984 Query 43077 ACGCTCTCCTTGTCCATGATTTTT 43100 | | |||||||||| ||| ||| Sbjct 985 ATACCCTCCTTGTCCTGGATCTTT 1008 >seq750760 Length=1299 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | || | |||||| || | || |||||| || || ||||| ||||| Sbjct 361 CCACCTCTGAGGCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCT 302 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || ||||| |||| || |||||||| || ||||||||||| || |||||||| | || Sbjct 301 AGGGTCCGGCCGTCCTCGAGCTGCTTCCCGGCGAATATGAGGCGTTGCTGGTCCGGAGGA 242 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||||||| ||| || || | | | | ||||| || ||||| Sbjct 241 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAGGACTCCACC 182 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || | || ||||| || |||||||| || || || ||||| ||||| || Sbjct 181 TCAAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 132 >seq620935 Length=1758 Score = 109 bits (120), Expect = 6e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| || || || || || |||| || ||||| || |||||||| Sbjct 58 CTCCTTCTGGATATTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGTTTGCCAGCGAA 117 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | ||| | || |||||||| ||| || |||| | Sbjct 118 GATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 177 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||||| || || | || ||||| || |||||||| ||||| || Sbjct 178 ATCGATCGTGTCAGATGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTCTTCAC 237 Query 43172 AAAGATTTGCATTTT 43186 || || ||||| || Sbjct 238 GAAAATCTGCATCTT 252 >seq726932 Length=530 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || ||||| || |||||||| Sbjct 58 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCAGCGAA 117 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || ||||||||| ||| || |||| | Sbjct 118 GATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 177 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| |||||| || || | || ||||| || |||||||| || || || Sbjct 178 GTCGATGGTGTCAGACGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCAC 237 Query 43172 AAAGATTTGCATTTT 43186 ||||| ||||| || Sbjct 238 GAAGATCTGCATCTT 252 >seq313781 Length=385 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||||| |||| | | || || |||||||| || ||||| Sbjct 385 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCGGCGAA 326 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || | |||||| || | || | | |||||||||| ||| | |||| ||||| Sbjct 325 GATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCC-TGAATCTTTGCTTTGACAT 267 Query 43111 TCGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| ||| ||||| || | ||||||||| || || || || |||| Sbjct 266 TATCAATGGTGTCGGAACTC---TCCACCTCCAGCGTGATGGTCTTTCCAGTCAGTGTCT 210 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||||||||| Sbjct 209 TCACGAAGATTTGCAT 194 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | || |||||| ||||| ||||||||||| ||||| ||| | Sbjct 181 ACGAAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTTCGCCC 122 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || |||| ||||||||| | || | | ||||| Sbjct 121 ATCCTCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGGAATCCCTTCCTT 62 Query 43088 GTCC 43091 |||| Sbjct 61 GTCC 58 >seq109077 Length=726 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||||| |||| | | || || |||||||| |||||||| Sbjct 1 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCAGCGAA 60 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | || |||||| || | || | | ||||||||| ||| | |||| ||| | Sbjct 61 GATCAATCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCC-TGAATCTTTGCTTTCACAT 119 Query 43111 TCGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| ||| ||||| || | ||||||||| || || || || |||| Sbjct 120 TATCAATGGTGTCGGAACTC---TCCACCTCCAGCGTGATGGTCTTCCCAGTCAGAGTCT 176 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||||||||| Sbjct 177 TCACGAAGATTTGCAT 192 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | || ||| || ||||| ||||||||||| ||||| ||| | Sbjct 205 ACGAAGCACCAAGTGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGCAAGAGTTCGCCC 264 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || | | ||||||||| | || | | |||||| Sbjct 265 ATCCTCAAGCTGCTTGCCCGCGAAAATCAACCTCTGCTGGTCCGGTGGAATCCCCTCCTT 324 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 43143 |||| ||| | || | ||| | | | | || || |||| || || || | | Sbjct 325 GTCC-TGAATCTTCGCTTTCACATTGTCGATGGTATCCGAGCTC---TCAACCTCTAAGG 380 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || ||||| |||| ||||| || ||||| ||||| Sbjct 381 TAATTGTCTTGCCAGTTAAAGTCTTCACGAAGATCTGCAT 420 >seq702768 Length=508 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||||||||| |||||||| | || || | |||||| || || || Sbjct 292 CTCCTTCTGAATGTTGTAATCAGCAAGAGTCCGACCATCCTCCAACTGCTTCCCTGCAAA 233 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | |||||| || | || | | ||||||||| ||| |||||| || | Sbjct 232 GATGAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCC-TGAATTTTTGCCTTCACAT 174 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || || | || || || || ||||| || |||| Sbjct 173 TATCTATAGTGTCTGAGCTC---TCAACCTCTAGTGTAATTGTCTTTCCCGTCAGGGTCT 117 Query 43168 TTACAAAGATTTGCAT 43183 | ||||| || ||||| Sbjct 116 TCACAAATATCTGCAT 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566413030215000