Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq681135 174 1e-38 seq726932 109 5e-19 seq620935 107 2e-18 seq736048 105 6e-18 seq702768 82.4 7e-11 seq662336 82.4 7e-11 >seq681135 Length=1827 Score = 174 bits (192), Expect = 1e-38 Identities = 496/750 (66%), Gaps = 17/750 (2%) Strand=Plus/Minus Query 57546 ATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTT 57605 ||||| |||||| | || || | | ||| | |||||||| ||||| || || |||||| Sbjct 1143 ATGTTCCCGATTCAGTACCCTGCAGTCTGGGAAATGTACAAGAAGGCCGAGGCGTCGTTT 1084 Query 57606 TGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAA-AGA 57664 ||||||| ||| ||||| ||||| ||| |||| | | | | ||||| ||||| || Sbjct 1083 TGGACCGCCGAGGAAGTCGACCTCTCTCAGGACCAGCGTCAATGGGAAAACCTCACCAGC 1024 Query 57665 ATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGT 57724 | |||| | || || | || | | || || |||||||| || || || || || Sbjct 1023 GAC-GAGAAGCACTTCATCAGTCATATCCTTGCCTTCTTCGCCGCTTCTGACGGAATCGT 965 Query 57725 TAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTT 57784 ||| ||| | | || ||| || | || || || || | ||||| | ||| Sbjct 964 CCTCGAAAATCTCGCCGGAAGGTTCATGAAGGAGGTCCAGGTCTCCGAGGCTCGTGCCTT 905 Query 57785 TTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGA 57844 || |||||||| | |||||||||||| | || || || ||||| || | | || Sbjct 904 CTATGGATTTCAGATTGCCATTGAAAACATCCACTCTGAGATGTACAGTCTGTTGTTAGA 845 Query 57845 TACGTACGTGAAGGA--CAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATG 57902 |||| | ||||| ||| | || |||| || || || |||| ||||| || || Sbjct 844 ATCGTATATCAAGGATCCAAAGGAGAAAAAC--AGGCTCTTTCACGCAATCGATACCATC 787 Query 57903 CCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACG 57962 ||| | || ||||| || ||||| | || |||||| | || || | || Sbjct 786 CCCTGTGTGGCGAAGAAAGCCCAGTGGGCTCTCCGATGGATCGACGGCTCC---GAAACC 730 Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT- 58021 || ||||| | || |||| |||||| ||| ||||| || ||||| || || ||||| Sbjct 729 TTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTC 670 Query 58022 TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 ||| | ||||| ||| | ||||||||||| || ||||| || | || || || || Sbjct 669 TGCT-CGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATGA 611 Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT 58141 ||| || ||||| |||||||| | || ||||| |||||| | | ||| | | Sbjct 610 GTTAATCTCGCGAGACGAGGGCTTACACTGCGATTTCGCGTGCTTGCTCTACAGCCTACT 551 Query 58142 TGTCAATAAACCGACGCG-GGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCG 58200 | |||||| | | ||| ||| | | || || || |||| |||| | || | Sbjct 550 TAGGAATAAA-CTAAGCGAGGAGAGAGTGAAGGCAATCGTCGCCGACTCGGTGGATATAG 492 Query 58201 AAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGA 58260 ||| ||||| ||| ||| || ||||| || | | || ||||||| || | | | Sbjct 491 AAAGAGAGTTCGTCTGCGACGCGTTACCGTGCGCTCTAGTGGGGATGAACAGTGCTCTAA 432 Query 58261 T--GTCAAAGTACATTGAGTTTGTTGCCGA 58288 | ||||| ||||| || || |||||||| Sbjct 431 TGAGTCAA--TACATCGAATTCGTTGCCGA 404 >seq726932 Length=530 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || || || ||| | || |||||| || Sbjct 252 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATCG 193 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || ||||||||||||| | || || ||| Sbjct 192 TCTGACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 133 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || |||||||| |||||| |||| ||| || | ||| || Sbjct 132 CAGCAGCGTCTCATCTTCGCTGGAAAACAGCTGGAGGACGGCCGAACCCTAGCCGACTAC 73 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || ||||| || || ||||| || Sbjct 72 AACATCCAGAAGGAGTCGACCCTCCACCTGGTGCT 38 >seq620935 Length=1758 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || || || ||| | || |||||| | Sbjct 252 AAGATGCAGATTTTCGTGAAGACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATCA 193 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || |||||||||||| | ||||| ||| Sbjct 192 TCTGACACGATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCGCCGGAC 133 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || || ||||||||||||||| |||| ||| Sbjct 132 CAGCAGCGCCTCATCTTCGCTGGCAAACAGCTGGAGGAC 94 >seq736048 Length=1016 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| || ||||| || || || ||||| || ||| | || ||||| || Sbjct 636 CATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATTACCCTTGAAGTTGAGAGTTC 577 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || ||| | ||| ||||||||| || | || || ||||| Sbjct 576 AGACACCATCGATAATGTGAAAGCTAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCA 517 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || ||||| ||||| |||||| ||||||| | ||| || || || || Sbjct 516 GCAGAGGCTCATATTTGCTGGTAAACAGCTGGAAGATGGTCGGACATTGGCGGACTACAA 457 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || ||||| || ||||| |||| || Sbjct 456 CATCCAGAAGGAATCTACCCTTCACTTGGTTCT 424 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| || || || ||||| |||||| | || ||||| || Sbjct 408 CATGCAAATATTTGTGAAGACCCTTACTGGTAAAACTATCACCCTTGAGGTTGAGAGTTC 349 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || ||| | ||| |||||||||||| | || |||||||| Sbjct 348 AGACACCATCGACAATGTGAAAGCAAAAATCCAGGACAAGGAAGGTATTCCACCCGACCA 289 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | ||||| || ||||| || ||| | ||||| | ||| || || || || Sbjct 288 GCAGAGGCTAATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGAACTTTGGCTGACTACAA 229 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || ||||| || || || Sbjct 228 TATACAGAAGGAATCAACCCTTCACCTTGTTCT 196 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| || ||||| || || || ||||| |||||| | || ||||| || Sbjct 864 CATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAAGTTGAGAGCTC 805 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | |||||| | ||| ||||||||| || | || || ||||| Sbjct 804 AGACACCATTGATAATGTCAAAGCAAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCA 745 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || ||||| ||||| || ||| | || || ||| || |||||||| Sbjct 744 GCAGAGGCTTATATTTGCTGGTAAGCAGCTCGAGGATGGCCGGACATTGGCTGATTATAA 685 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||| || || ||||| |||| || Sbjct 684 CATCCAGAAAGAGTCCACCCTTCACTTGGTTCT 652 >seq702768 Length=508 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| || || || || || | || ||||| || Sbjct 101 ATGCAGATATTTGTGAAGACCCTGACGGGAAAGACAATTACACTAGAGGTTGAGAGCTCA 160 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || | ||| |||||||||||| | || || || ||| Sbjct 161 GACACTATAGATAATGTGAAGGCAAAAATTCAGGACAAGGAAGGGATCCCTCCAGATCAG 220 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || || |||||||| || | |||| | ||||| ||| Sbjct 221 CAGAGGCTCATCTTTGCAGGGAAGCAGTTGGAGGATGGTCGGACTCTTGCTGATTACAAC 280 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || || || |||||||| |||| ||| Sbjct 281 ATTCAGAAGGAGTCTACTCTTCACTTGGTTCTT 313 >seq662336 Length=3756 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||||||| | || || || |||||| | | || || ||||||||||| |||| Sbjct 165 GGACAAGGAAGGCATTCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAACAACTGGA 224 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| | ||| | ||||||||||| |||||||| || || ||||| || || | Sbjct 225 AGATGGTCGCACTCTTGCAGATTATAACATCCAAAAAGAGTCCACACTTCACCTTGTTTT 284 Query 31405 TAGACTGAGGGGCGG 31419 || || ||||| || Sbjct 285 GAGGCTTAGGGGAGG 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441553211010000