Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq681135 183 4e-41 seq5092 84.2 3e-11 >seq681135 Length=1827 Score = 183 bits (202), Expect = 4e-41 Identities = 415/616 (67%), Gaps = 20/616 (3%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| || |||||||||||||| | |||||||||| ||||| || || || || || Sbjct 565 CAAGCACGCGAAATCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGT 624 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 | ||| ||||| || || || || || ||||| ||||| || ||| |||||| || Sbjct 625 TAATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAA 684 Query 33698 GAAGATTCCTTCTACTGCAG-CAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGT 33753 |||||| ||||| || |||| | || || | || | || || | ||| || || Sbjct 685 GAAGATGCCTTCCAC-GCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGT 743 Query 33754 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 | ||||| ||||||| | ||| ||||| ||||| || || || || || | Sbjct 744 CG---ATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTG 800 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 | | |||||| |||||| || || ||| || | ||| | || | ||| ||||| | Sbjct 801 CGTGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGT 860 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 |||| || || || |||||||||||||| ||||||||||| ||||| | |||||||| Sbjct 861 ACATCTCAGAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGG 920 Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 | ||| || || | || | | | || | |||||| || ||||| ||| | Sbjct 921 AGACCTGGACCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATTCCGTCAGAAG 980 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CTGGTGTTAGTTTATT 34051 | || || || || | | ||| | || || | || |||| |||||| || || || Sbjct 981 CGGCGAAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTG--AGGTT-TT 1037 Query 34052 CCAATCATTGA----TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 34107 || |||||| || | ||| | || ||||| || | |||||||| || |||| Sbjct 1038 CC---CATTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCGGTCCAAAACGACGCCT 1094 Query 34108 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 34167 | ||||| || ||||| | ||||| || | || || || ||||| ||| || | || Sbjct 1095 CGGCCTTCTTGTACATTTCCCAGACTGCAGGGTACTGAATCGGGAACATACAGAACCGAT 1154 Query 34168 TTGGATTTGGTGCAAG 34183 ||| || || || || Sbjct 1155 CTGGGTTAGGAGCGAG 1170 >seq5092 Length=1596 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| ||||| || | || || ||||| || || ||||| | ||| | || || | Sbjct 848 GTTCCTGCATTGAAAAGAGTGGGTGAAGCATGAGTGAACCAACGCTGAGACATTAAATGG 789 Query 63723 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | ||||| || || || || | ||| |||||||| || | || | ||| || Sbjct 788 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACTCTCATCAA 730 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| ||||| |||| || | || |||| | ||||| | || | Sbjct 729 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGATAGGACCTCTCAAG 670 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| |||||||| || | || |||||| || || ||||| || Sbjct 669 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCGGTCATAAATGAT 622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 623864839590000